miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 32955 0.68 0.48758
Target:  5'- uCGGCGGCGggUGCUUcgGCaACCCGu- -3'
miRNA:   3'- -GCCGCCGUuuGCGGAagCG-UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 33286 0.68 0.49736
Target:  5'- gGGUGuCAucGACGCCggUCGCGCCgCGGu -3'
miRNA:   3'- gCCGCcGU--UUGCGGa-AGCGUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 33414 0.66 0.619925
Target:  5'- uGGaCGGCGAACGUCccggCGUACaCCGcGGc -3'
miRNA:   3'- gCC-GCCGUUUGCGGaa--GCGUG-GGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 34350 0.66 0.59906
Target:  5'- gCGGCGGCGugAGgGUUgugCGCGCUgCGGAa -3'
miRNA:   3'- -GCCGCCGU--UUgCGGaa-GCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 34827 0.66 0.609484
Target:  5'- gGGCGGCG---GCCgaaGCGCgCGGGa -3'
miRNA:   3'- gCCGCCGUuugCGGaagCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 36962 0.69 0.421901
Target:  5'- gCGGCGGCcgucaccgGAACGCCcUUGCACgagUGGAu -3'
miRNA:   3'- -GCCGCCG--------UUUGCGGaAGCGUGg--GCCU- -5'
18400 3' -59.2 NC_004681.1 + 37206 0.68 0.477891
Target:  5'- aCGGCGcGCAcguaGAUGUC-UC-CACCCGGGg -3'
miRNA:   3'- -GCCGC-CGU----UUGCGGaAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 39348 0.67 0.547468
Target:  5'- gCGGCGGCccuuGGCGCCcUUGC-CgCGGc -3'
miRNA:   3'- -GCCGCCGu---UUGCGGaAGCGuGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 40068 0.66 0.630376
Target:  5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3'
miRNA:   3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 40480 0.66 0.600101
Target:  5'- -cGCGGCcGACGCCgccacgauguagcaaUCGUGCCCGa- -3'
miRNA:   3'- gcCGCCGuUUGCGGa--------------AGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 41880 0.68 0.468298
Target:  5'- gCGGC-GCGAAgGCCgUCGaACCUGGAg -3'
miRNA:   3'- -GCCGcCGUUUgCGGaAGCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 42267 0.67 0.517177
Target:  5'- -cGCGGaAGGCGCCUUCacgGCCUGGAa -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGcg-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 46841 0.66 0.59906
Target:  5'- -cGCGGCAAcCGCCccgGCACCCcGAu -3'
miRNA:   3'- gcCGCCGUUuGCGGaagCGUGGGcCU- -5'
18400 3' -59.2 NC_004681.1 + 46881 0.66 0.630376
Target:  5'- aCGGCGcGCGggaugaccguGACGCCgugCGCGCgcagcgCCGGu -3'
miRNA:   3'- -GCCGC-CGU----------UUGCGGaa-GCGUG------GGCCu -5'
18400 3' -59.2 NC_004681.1 + 47524 0.66 0.59906
Target:  5'- gGGCGugacCGAugGCUgggugCGCuGCCCGGAu -3'
miRNA:   3'- gCCGCc---GUUugCGGaa---GCG-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 49415 0.66 0.582438
Target:  5'- gCGGaCGGUGAGguugugcagaccgccCGCCUUgCGCGCCuCGGu -3'
miRNA:   3'- -GCC-GCCGUUU---------------GCGGAA-GCGUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 50658 0.66 0.578296
Target:  5'- aGcGCuGCgAGACGCCUacCGCACCgGGGa -3'
miRNA:   3'- gC-CGcCG-UUUGCGGAa-GCGUGGgCCU- -5'
18400 3' -59.2 NC_004681.1 + 52540 0.66 0.630376
Target:  5'- gGGCGaGCAAGCguuccucaaucGCCUcgCGCACCUuGGc -3'
miRNA:   3'- gCCGC-CGUUUG-----------CGGAa-GCGUGGG-CCu -5'
18400 3' -59.2 NC_004681.1 + 52964 0.72 0.280064
Target:  5'- gGGCacgcgGGCAGGCcgauggccaGCCUUC-CGCCCGGAa -3'
miRNA:   3'- gCCG-----CCGUUUG---------CGGAAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 53570 0.69 0.412957
Target:  5'- gGuGCGGCGuucGAUGUCUUCGUugCCGaGGg -3'
miRNA:   3'- gC-CGCCGU---UUGCGGAAGCGugGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.