miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 67761 0.71 0.337981
Target:  5'- gCGGCGGUAcuucAAUGCCUagccUCGgccguagccucCACCCGGGc -3'
miRNA:   3'- -GCCGCCGU----UUGCGGA----AGC-----------GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 66759 0.66 0.585548
Target:  5'- cCGGUGGCAacgccgccuacaucGACGCUga-GCAcucCCUGGAc -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGaagCGU---GGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 66233 0.7 0.353758
Target:  5'- uCGcGCGGCAAGCGCaugaaGCACaccaCGGAa -3'
miRNA:   3'- -GC-CGCCGUUUGCGgaag-CGUGg---GCCU- -5'
18400 3' -59.2 NC_004681.1 + 63838 0.67 0.526198
Target:  5'- uGGUGGCGuaccgagGGCGCCguaGCGCCCu-- -3'
miRNA:   3'- gCCGCCGU-------UUGCGGaagCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 62524 0.71 0.310162
Target:  5'- gGGCGGCGgagagggcggugucGGCGCCcagccaugccaGUACCCGGAu -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaag--------CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 61310 0.66 0.609484
Target:  5'- uCGGCGGCGucGCGCCagaUgGUGCagCGGAg -3'
miRNA:   3'- -GCCGCCGUu-UGCGGa--AgCGUGg-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 60389 0.71 0.322723
Target:  5'- uGGCGGCGAAUGuCCUggaGCACgguaCGGGg -3'
miRNA:   3'- gCCGCCGUUUGC-GGAag-CGUGg---GCCU- -5'
18400 3' -59.2 NC_004681.1 + 60291 0.67 0.56797
Target:  5'- cCGcGCGGCGggUGCCgaucaccUCGCGCUCa-- -3'
miRNA:   3'- -GC-CGCCGUuuGCGGa------AGCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 60019 0.66 0.609484
Target:  5'- cCGGUgGGCAccugcuCGCCUUCggcggcucccGCACCUGGc -3'
miRNA:   3'- -GCCG-CCGUuu----GCGGAAG----------CGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 59588 0.66 0.629331
Target:  5'- gGGUGGgGggUuCCUuggaggaUUGCACCCGGGc -3'
miRNA:   3'- gCCGCCgUuuGcGGA-------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 59201 0.66 0.609484
Target:  5'- aCGGCGGUAGA--CCUUCaGCGUCUGGGg -3'
miRNA:   3'- -GCCGCCGUUUgcGGAAG-CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 59106 0.68 0.491481
Target:  5'- -cGCGGUggGCGCCcucccccacgaggucUUCgaGCACCUGGGc -3'
miRNA:   3'- gcCGCCGuuUGCGG---------------AAG--CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 58050 0.69 0.411183
Target:  5'- uCGGCGGCAugagcaacgagaacuGGCGCgUggaagCGCgcugcaacggccaagACCCGGAa -3'
miRNA:   3'- -GCCGCCGU---------------UUGCGgAa----GCG---------------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 57893 0.69 0.440133
Target:  5'- uCGGCGGCGcGGCGCgUggUCGCGgucUCCGGu -3'
miRNA:   3'- -GCCGCCGU-UUGCGgA--AGCGU---GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 57171 0.79 0.102809
Target:  5'- gCGGaGGCAGACGCCUUCGU-CCaCGGAc -3'
miRNA:   3'- -GCCgCCGUUUGCGGAAGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 56432 0.7 0.353758
Target:  5'- aGGCGcGCugcaccuuGGACGCCUUgGCGCCgUGGGu -3'
miRNA:   3'- gCCGC-CG--------UUUGCGGAAgCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 54994 0.73 0.246219
Target:  5'- uGGC-GCAAGCucgGCCUgaagugccuucaggUCGCGCCCGGGg -3'
miRNA:   3'- gCCGcCGUUUG---CGGA--------------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 54252 0.69 0.43005
Target:  5'- aCGGUGGCGAuuucucuugcGCGCgUUgacuuucCGCuCCCGGAg -3'
miRNA:   3'- -GCCGCCGUU----------UGCGgAA-------GCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 53659 0.66 0.619925
Target:  5'- cCGGUGGC-GACGUUcUUGCACUCGa- -3'
miRNA:   3'- -GCCGCCGuUUGCGGaAGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 53570 0.69 0.412957
Target:  5'- gGuGCGGCGuucGAUGUCUUCGUugCCGaGGg -3'
miRNA:   3'- gC-CGCCGU---UUGCGGAAGCGugGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.