miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 57171 0.79 0.102809
Target:  5'- gCGGaGGCAGACGCCUUCGU-CCaCGGAc -3'
miRNA:   3'- -GCCgCCGUUUGCGGAAGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 24053 0.68 0.49736
Target:  5'- aGGuCGGCGAACGUgUUgGCacGCCCGa- -3'
miRNA:   3'- gCC-GCCGUUUGCGgAAgCG--UGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 63838 0.67 0.526198
Target:  5'- uGGUGGCGuaccgagGGCGCCguaGCGCCCu-- -3'
miRNA:   3'- gCCGCCGU-------UUGCGGaagCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 40068 0.66 0.630376
Target:  5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3'
miRNA:   3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 56432 0.7 0.353758
Target:  5'- aGGCGcGCugcaccuuGGACGCCUUgGCGCCgUGGGu -3'
miRNA:   3'- gCCGC-CG--------UUUGCGGAAgCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 19520 0.7 0.395426
Target:  5'- uCGGUGccGCAGACGCCUgcguccUCGuCGCCCGu- -3'
miRNA:   3'- -GCCGC--CGUUUGCGGA------AGC-GUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 16125 0.69 0.421901
Target:  5'- gCGGCGGCGcccuUGCCa--GCAgCCGGGa -3'
miRNA:   3'- -GCCGCCGUuu--GCGGaagCGUgGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 54252 0.69 0.43005
Target:  5'- aCGGUGGCGAuuucucuugcGCGCgUUgacuuucCGCuCCCGGAg -3'
miRNA:   3'- -GCCGCCGUU----------UGCGgAA-------GCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 41880 0.68 0.468298
Target:  5'- gCGGC-GCGAAgGCCgUCGaACCUGGAg -3'
miRNA:   3'- -GCCGcCGUUUgCGGaAGCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 20544 0.68 0.496378
Target:  5'- gGGCGGCGAccaccuuGCuGUCgauggUCGCGCCUGaGAu -3'
miRNA:   3'- gCCGCCGUU-------UG-CGGa----AGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 30682 0.68 0.48758
Target:  5'- aGGCaGCGAAcCGCCUUgGCGCuugcgCCGGu -3'
miRNA:   3'- gCCGcCGUUU-GCGGAAgCGUG-----GGCCu -5'
18400 3' -59.2 NC_004681.1 + 23462 0.68 0.46259
Target:  5'- aGGCgGGCAggAgguugaccaccucggGCGCCUgaaGCugCCGGAa -3'
miRNA:   3'- gCCG-CCGU--U---------------UGCGGAag-CGugGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 5435 0.74 0.224653
Target:  5'- aGGCGuGCcAGCGCCUgugCGCGCuuGGc -3'
miRNA:   3'- gCCGC-CGuUUGCGGAa--GCGUGggCCu -5'
18400 3' -59.2 NC_004681.1 + 15465 0.68 0.491481
Target:  5'- uGGCgucGGCGAACGCCUUacccucggcgguuaGCugCUGGu -3'
miRNA:   3'- gCCG---CCGUUUGCGGAAg-------------CGugGGCCu -5'
18400 3' -59.2 NC_004681.1 + 52964 0.72 0.280064
Target:  5'- gGGCacgcgGGCAGGCcgauggccaGCCUUC-CGCCCGGAa -3'
miRNA:   3'- gCCG-----CCGUUUG---------CGGAAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 57893 0.69 0.440133
Target:  5'- uCGGCGGCGcGGCGCgUggUCGCGgucUCCGGu -3'
miRNA:   3'- -GCCGCCGU-UUGCGgA--AGCGU---GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 59106 0.68 0.491481
Target:  5'- -cGCGGUggGCGCCcucccccacgaggucUUCgaGCACCUGGGc -3'
miRNA:   3'- gcCGCCGuuUGCGG---------------AAG--CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 7249 0.68 0.511198
Target:  5'- gGGUGuCGAGCGCCUUggacugcaggaucacCGCAuCCCGGu -3'
miRNA:   3'- gCCGCcGUUUGCGGAA---------------GCGU-GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 62524 0.71 0.310162
Target:  5'- gGGCGGCGgagagggcggugucGGCGCCcagccaugccaGUACCCGGAu -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaag--------CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 53570 0.69 0.412957
Target:  5'- gGuGCGGCGuucGAUGUCUUCGUugCCGaGGg -3'
miRNA:   3'- gC-CGCCGU---UUGCGGAAGCGugGGC-CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.