miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 59106 0.68 0.491481
Target:  5'- -cGCGGUggGCGCCcucccccacgaggucUUCgaGCACCUGGGc -3'
miRNA:   3'- gcCGCCGuuUGCGG---------------AAG--CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 56432 0.7 0.353758
Target:  5'- aGGCGcGCugcaccuuGGACGCCUUgGCGCCgUGGGu -3'
miRNA:   3'- gCCGC-CG--------UUUGCGGAAgCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 53659 0.66 0.619925
Target:  5'- cCGGUGGC-GACGUUcUUGCACUCGa- -3'
miRNA:   3'- -GCCGCCGuUUGCGGaAGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 7372 0.66 0.600101
Target:  5'- aGGCGGCGcacucGGCGCCgagguggacggccgCGUcguggaugGCCUGGAg -3'
miRNA:   3'- gCCGCCGU-----UUGCGGaa------------GCG--------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 7249 0.68 0.511198
Target:  5'- gGGUGuCGAGCGCCUUggacugcaggaucacCGCAuCCCGGu -3'
miRNA:   3'- gCCGCcGUUUGCGGAA---------------GCGU-GGGCCu -5'
18400 3' -59.2 NC_004681.1 + 62524 0.71 0.310162
Target:  5'- gGGCGGCGgagagggcggugucGGCGCCcagccaugccaGUACCCGGAu -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaag--------CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 14550 0.66 0.59906
Target:  5'- gCGcGCGGCGuuCGCCUcCGCcUCgCGGGc -3'
miRNA:   3'- -GC-CGCCGUuuGCGGAaGCGuGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 52964 0.72 0.280064
Target:  5'- gGGCacgcgGGCAGGCcgauggccaGCCUUC-CGCCCGGAa -3'
miRNA:   3'- gCCG-----CCGUUUG---------CGGAAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 5435 0.74 0.224653
Target:  5'- aGGCGuGCcAGCGCCUgugCGCGCuuGGc -3'
miRNA:   3'- gCCGC-CGuUUGCGGAa--GCGUGggCCu -5'
18400 3' -59.2 NC_004681.1 + 41880 0.68 0.468298
Target:  5'- gCGGC-GCGAAgGCCgUCGaACCUGGAg -3'
miRNA:   3'- -GCCGcCGUUUgCGGaAGCgUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 63838 0.67 0.526198
Target:  5'- uGGUGGCGuaccgagGGCGCCguaGCGCCCu-- -3'
miRNA:   3'- gCCGCCGU-------UUGCGGaagCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 40068 0.66 0.630376
Target:  5'- cCGGUGaGUugacccGGCGCCgaCGCGCgCGGAu -3'
miRNA:   3'- -GCCGC-CGu-----UUGCGGaaGCGUGgGCCU- -5'
18400 3' -59.2 NC_004681.1 + 60291 0.67 0.56797
Target:  5'- cCGcGCGGCGggUGCCgaucaccUCGCGCUCa-- -3'
miRNA:   3'- -GC-CGCCGUuuGCGGa------AGCGUGGGccu -5'
18400 3' -59.2 NC_004681.1 + 59201 0.66 0.609484
Target:  5'- aCGGCGGUAGA--CCUUCaGCGUCUGGGg -3'
miRNA:   3'- -GCCGCCGUUUgcGGAAG-CGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 61310 0.66 0.609484
Target:  5'- uCGGCGGCGucGCGCCagaUgGUGCagCGGAg -3'
miRNA:   3'- -GCCGCCGUu-UGCGGa--AgCGUGg-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 59588 0.66 0.629331
Target:  5'- gGGUGGgGggUuCCUuggaggaUUGCACCCGGGc -3'
miRNA:   3'- gCCGCCgUuuGcGGA-------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 20012 0.68 0.468298
Target:  5'- aGGCccGCGGugGCCUUcaugcCGUGCCCGGu -3'
miRNA:   3'- gCCGc-CGUUugCGGAA-----GCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 19520 0.7 0.395426
Target:  5'- uCGGUGccGCAGACGCCUgcguccUCGuCGCCCGu- -3'
miRNA:   3'- -GCCGC--CGUUUGCGGA------AGC-GUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 54252 0.69 0.43005
Target:  5'- aCGGUGGCGAuuucucuugcGCGCgUUgacuuucCGCuCCCGGAg -3'
miRNA:   3'- -GCCGCCGUU----------UGCGgAA-------GCGuGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 25073 0.66 0.59906
Target:  5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3'
miRNA:   3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.