miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 3' -59.2 NC_004681.1 + 27676 0.67 0.558718
Target:  5'- aCGGCGGCGgcggugguggugguGGCGCCUacguuaaccgcaucuUCGUcCCCGu- -3'
miRNA:   3'- -GCCGCCGU--------------UUGCGGA---------------AGCGuGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 34350 0.66 0.59906
Target:  5'- gCGGCGGCGugAGgGUUgugCGCGCUgCGGAa -3'
miRNA:   3'- -GCCGCCGU--UUgCGGaa-GCGUGG-GCCU- -5'
18400 3' -59.2 NC_004681.1 + 67761 0.71 0.337981
Target:  5'- gCGGCGGUAcuucAAUGCCUagccUCGgccguagccucCACCCGGGc -3'
miRNA:   3'- -GCCGCCGU----UUGCGGA----AGC-----------GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 22279 0.67 0.521179
Target:  5'- uGGCGGCGugGGCGCCcugccCGUcauggcgcagggugaGCCCGGu -3'
miRNA:   3'- gCCGCCGU--UUGCGGaa---GCG---------------UGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 60389 0.71 0.322723
Target:  5'- uGGCGGCGAAUGuCCUggaGCACgguaCGGGg -3'
miRNA:   3'- gCCGCCGUUUGC-GGAag-CGUGg---GCCU- -5'
18400 3' -59.2 NC_004681.1 + 17274 0.67 0.562825
Target:  5'- gGGCGGCGgguaucccggagacGACGCCcugcuggcgcgCGUGCCCGcGGg -3'
miRNA:   3'- gCCGCCGU--------------UUGCGGaa---------GCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 50658 0.66 0.578296
Target:  5'- aGcGCuGCgAGACGCCUacCGCACCgGGGa -3'
miRNA:   3'- gC-CGcCG-UUUGCGGAa-GCGUGGgCCU- -5'
18400 3' -59.2 NC_004681.1 + 54994 0.73 0.246219
Target:  5'- uGGC-GCAAGCucgGCCUgaagugccuucaggUCGCGCCCGGGg -3'
miRNA:   3'- gCCGcCGUUUG---CGGA--------------AGCGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 25073 0.66 0.59906
Target:  5'- gGGCGGCAccucgcucaGCCUccUCGgCACCuCGGu -3'
miRNA:   3'- gCCGCCGUuug------CGGA--AGC-GUGG-GCCu -5'
18400 3' -59.2 NC_004681.1 + 30577 0.7 0.394562
Target:  5'- cCGGC-GCAAGCGCCaaggcggUUCGCugCCuGAc -3'
miRNA:   3'- -GCCGcCGUUUGCGG-------AAGCGugGGcCU- -5'
18400 3' -59.2 NC_004681.1 + 58050 0.69 0.411183
Target:  5'- uCGGCGGCAugagcaacgagaacuGGCGCgUggaagCGCgcugcaacggccaagACCCGGAa -3'
miRNA:   3'- -GCCGCCGU---------------UUGCGgAa----GCG---------------UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 19249 0.66 0.630376
Target:  5'- -cGCaGCAAGCGCCaggUCuuCACCUGGAc -3'
miRNA:   3'- gcCGcCGUUUGCGGa--AGc-GUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 42267 0.67 0.517177
Target:  5'- -cGCGGaAGGCGCCUUCacgGCCUGGAa -3'
miRNA:   3'- gcCGCCgUUUGCGGAAGcg-UGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 3027 0.67 0.537303
Target:  5'- -aGCGGC-AAUGCC--CGCACCCGcGGc -3'
miRNA:   3'- gcCGCCGuUUGCGGaaGCGUGGGC-CU- -5'
18400 3' -59.2 NC_004681.1 + 8484 0.67 0.527204
Target:  5'- aCGGCuGCGgcugagcugaugGGCGCCUUCGCGgaCGGu -3'
miRNA:   3'- -GCCGcCGU------------UUGCGGAAGCGUggGCCu -5'
18400 3' -59.2 NC_004681.1 + 27085 0.67 0.537303
Target:  5'- cCGGUcuuGGCAc-CGUCcacUCGCACCCGGu -3'
miRNA:   3'- -GCCG---CCGUuuGCGGa--AGCGUGGGCCu -5'
18400 3' -59.2 NC_004681.1 + 37206 0.68 0.477891
Target:  5'- aCGGCGcGCAcguaGAUGUC-UC-CACCCGGGg -3'
miRNA:   3'- -GCCGC-CGU----UUGCGGaAGcGUGGGCCU- -5'
18400 3' -59.2 NC_004681.1 + 14572 0.68 0.477891
Target:  5'- aCGGCcGCAGuCGCCUUCGgCAC-CGGc -3'
miRNA:   3'- -GCCGcCGUUuGCGGAAGC-GUGgGCCu -5'
18400 3' -59.2 NC_004681.1 + 27814 0.69 0.449416
Target:  5'- gCGGCGGCGccAACGgUggCGCAUCCGu- -3'
miRNA:   3'- -GCCGCCGU--UUGCgGaaGCGUGGGCcu -5'
18400 3' -59.2 NC_004681.1 + 36962 0.69 0.421901
Target:  5'- gCGGCGGCcgucaccgGAACGCCcUUGCACgagUGGAu -3'
miRNA:   3'- -GCCGCCG--------UUUGCGGaAGCGUGg--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.