miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18400 5' -57.6 NC_004681.1 + 59786 0.66 0.663279
Target:  5'- --cCCAGcaGGGGGCGUGGcGG-CGCUg -3'
miRNA:   3'- acaGGUC--UUCCCGUACCuCCaGCGGu -5'
18400 5' -57.6 NC_004681.1 + 23467 0.66 0.652609
Target:  5'- cGUggAGgcGGGCA-GGAGGUUGaCCAc -3'
miRNA:   3'- aCAggUCuuCCCGUaCCUCCAGC-GGU- -5'
18400 5' -57.6 NC_004681.1 + 696 0.66 0.641921
Target:  5'- --aCCAcaucGAGGGGcCAUGcGAGGUCuGCCu -3'
miRNA:   3'- acaGGU----CUUCCC-GUAC-CUCCAG-CGGu -5'
18400 5' -57.6 NC_004681.1 + 73287 0.67 0.609843
Target:  5'- aGUCCGuGGAGuGCcgGGAGGUgCGCg- -3'
miRNA:   3'- aCAGGU-CUUCcCGuaCCUCCA-GCGgu -5'
18400 5' -57.6 NC_004681.1 + 16562 0.67 0.599176
Target:  5'- aGUCCGuGggGGGC-UGGAa--CGCCAc -3'
miRNA:   3'- aCAGGU-CuuCCCGuACCUccaGCGGU- -5'
18400 5' -57.6 NC_004681.1 + 56302 0.67 0.599176
Target:  5'- gGUCCAGGccaccgacucaaGGGGCAU-GAGGagcgCGCUg -3'
miRNA:   3'- aCAGGUCU------------UCCCGUAcCUCCa---GCGGu -5'
18400 5' -57.6 NC_004681.1 + 59444 0.69 0.475302
Target:  5'- --aCCAuGAAGGGCAccuggGGAGG-CGUCAg -3'
miRNA:   3'- acaGGU-CUUCCCGUa----CCUCCaGCGGU- -5'
18400 5' -57.6 NC_004681.1 + 23589 0.69 0.465513
Target:  5'- aGggCUAcGAGGGCAcGGGGGUgGCCAu -3'
miRNA:   3'- aCa-GGUcUUCCCGUaCCUCCAgCGGU- -5'
18400 5' -57.6 NC_004681.1 + 4511 0.7 0.427454
Target:  5'- gGUCCAGuuuggcuAGGGCAgacucUGGAauccaGuGUCGCCAa -3'
miRNA:   3'- aCAGGUCu------UCCCGU-----ACCU-----C-CAGCGGU- -5'
18400 5' -57.6 NC_004681.1 + 21383 0.71 0.348193
Target:  5'- gGgaaCAGGAggcccuuGGGC-UGGGGGUCGCCAg -3'
miRNA:   3'- aCag-GUCUU-------CCCGuACCUCCAGCGGU- -5'
18400 5' -57.6 NC_004681.1 + 18439 1.08 0.000876
Target:  5'- cUGUCCAGAAGGGCAUGGAGGUCGCCAa -3'
miRNA:   3'- -ACAGGUCUUCCCGUACCUCCAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.