Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18400 | 5' | -57.6 | NC_004681.1 | + | 18439 | 1.08 | 0.000876 |
Target: 5'- cUGUCCAGAAGGGCAUGGAGGUCGCCAa -3' miRNA: 3'- -ACAGGUCUUCCCGUACCUCCAGCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 23589 | 0.69 | 0.465513 |
Target: 5'- aGggCUAcGAGGGCAcGGGGGUgGCCAu -3' miRNA: 3'- aCa-GGUcUUCCCGUaCCUCCAgCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 59444 | 0.69 | 0.475302 |
Target: 5'- --aCCAuGAAGGGCAccuggGGAGG-CGUCAg -3' miRNA: 3'- acaGGU-CUUCCCGUa----CCUCCaGCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 696 | 0.66 | 0.641921 |
Target: 5'- --aCCAcaucGAGGGGcCAUGcGAGGUCuGCCu -3' miRNA: 3'- acaGGU----CUUCCC-GUAC-CUCCAG-CGGu -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 23467 | 0.66 | 0.652609 |
Target: 5'- cGUggAGgcGGGCA-GGAGGUUGaCCAc -3' miRNA: 3'- aCAggUCuuCCCGUaCCUCCAGC-GGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 73287 | 0.67 | 0.609843 |
Target: 5'- aGUCCGuGGAGuGCcgGGAGGUgCGCg- -3' miRNA: 3'- aCAGGU-CUUCcCGuaCCUCCA-GCGgu -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 56302 | 0.67 | 0.599176 |
Target: 5'- gGUCCAGGccaccgacucaaGGGGCAU-GAGGagcgCGCUg -3' miRNA: 3'- aCAGGUCU------------UCCCGUAcCUCCa---GCGGu -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 16562 | 0.67 | 0.599176 |
Target: 5'- aGUCCGuGggGGGC-UGGAa--CGCCAc -3' miRNA: 3'- aCAGGU-CuuCCCGuACCUccaGCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 4511 | 0.7 | 0.427454 |
Target: 5'- gGUCCAGuuuggcuAGGGCAgacucUGGAauccaGuGUCGCCAa -3' miRNA: 3'- aCAGGUCu------UCCCGU-----ACCU-----C-CAGCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 21383 | 0.71 | 0.348193 |
Target: 5'- gGgaaCAGGAggcccuuGGGC-UGGGGGUCGCCAg -3' miRNA: 3'- aCag-GUCUU-------CCCGuACCUCCAGCGGU- -5' |
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18400 | 5' | -57.6 | NC_004681.1 | + | 59786 | 0.66 | 0.663279 |
Target: 5'- --cCCAGcaGGGGGCGUGGcGG-CGCUg -3' miRNA: 3'- acaGGUC--UUCCCGUACCuCCaGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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