miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18401 5' -54 NC_004681.1 + 33214 0.66 0.881033
Target:  5'- -aGACUUC-CcGUCGAGGU-UCUGuGCg -3'
miRNA:   3'- agCUGAAGuGaCAGCUCCGuAGGC-CG- -5'
18401 5' -54 NC_004681.1 + 31383 0.66 0.873483
Target:  5'- -gGGCUUCugcggccagauGCUGUUGAGGUcUCCGa- -3'
miRNA:   3'- agCUGAAG-----------UGACAGCUCCGuAGGCcg -5'
18401 5' -54 NC_004681.1 + 18114 0.66 0.873483
Target:  5'- cCGAgCcgUACUGgccCGuGGCAUCCGGg -3'
miRNA:   3'- aGCU-GaaGUGACa--GCuCCGUAGGCCg -5'
18401 5' -54 NC_004681.1 + 64393 0.66 0.865693
Target:  5'- cCGGCaUCGucCUGUaCGAGGCAUUCGcCa -3'
miRNA:   3'- aGCUGaAGU--GACA-GCUCCGUAGGCcG- -5'
18401 5' -54 NC_004681.1 + 14612 0.66 0.865693
Target:  5'- aUCGACUUCACcuUGcUCGcgccaGCA-CCGGCc -3'
miRNA:   3'- -AGCUGAAGUG--AC-AGCuc---CGUaGGCCG- -5'
18401 5' -54 NC_004681.1 + 65324 0.66 0.86331
Target:  5'- gCGGCaggcCGCUGUCGGGGUcgauAUCCugacccucccaccaGGCg -3'
miRNA:   3'- aGCUGaa--GUGACAGCUCCG----UAGG--------------CCG- -5'
18401 5' -54 NC_004681.1 + 15008 0.66 0.85767
Target:  5'- gCGuACUggaACUG-CGAGGCGacgUCGGCg -3'
miRNA:   3'- aGC-UGAag-UGACaGCUCCGUa--GGCCG- -5'
18401 5' -54 NC_004681.1 + 9102 0.66 0.84942
Target:  5'- cCGGCgcCGCUGgcUCG-GGC-UCUGGCg -3'
miRNA:   3'- aGCUGaaGUGAC--AGCuCCGuAGGCCG- -5'
18401 5' -54 NC_004681.1 + 69654 0.67 0.840951
Target:  5'- gUCGGCcuuuucacgUCACUugcaGUCGGGGCA--CGGCc -3'
miRNA:   3'- -AGCUGa--------AGUGA----CAGCUCCGUagGCCG- -5'
18401 5' -54 NC_004681.1 + 35795 0.67 0.823389
Target:  5'- cCGACUcCAUUG-CGGGGCG--CGGCc -3'
miRNA:   3'- aGCUGAaGUGACaGCUCCGUagGCCG- -5'
18401 5' -54 NC_004681.1 + 29437 0.67 0.814313
Target:  5'- aCGAg-UCGCUGUCGAGGUcgaaGGUg -3'
miRNA:   3'- aGCUgaAGUGACAGCUCCGuaggCCG- -5'
18401 5' -54 NC_004681.1 + 57894 0.67 0.814313
Target:  5'- cUCGGCggCGCggcgcgugGUCGcGGUcUCCGGUg -3'
miRNA:   3'- -AGCUGaaGUGa-------CAGCuCCGuAGGCCG- -5'
18401 5' -54 NC_004681.1 + 48538 0.67 0.814313
Target:  5'- --uACUUCACgGUCGAGcGCga-CGGCa -3'
miRNA:   3'- agcUGAAGUGaCAGCUC-CGuagGCCG- -5'
18401 5' -54 NC_004681.1 + 32001 0.67 0.813395
Target:  5'- aUCGGC-UCGCUGaUCGGcgccgcgggugucGGCAcggCCGGUg -3'
miRNA:   3'- -AGCUGaAGUGAC-AGCU-------------CCGUa--GGCCG- -5'
18401 5' -54 NC_004681.1 + 60659 0.67 0.805054
Target:  5'- gUCGGCca-GCggccCGAGGCGUgCGGCg -3'
miRNA:   3'- -AGCUGaagUGaca-GCUCCGUAgGCCG- -5'
18401 5' -54 NC_004681.1 + 65810 0.68 0.746202
Target:  5'- gUCGGCcUCGCUGagGAGGuCAUgagCGGCc -3'
miRNA:   3'- -AGCUGaAGUGACagCUCC-GUAg--GCCG- -5'
18401 5' -54 NC_004681.1 + 53778 0.68 0.746202
Target:  5'- aCuGCUUCAUgggGUCGGuGguUCCGGCg -3'
miRNA:   3'- aGcUGAAGUGa--CAGCUcCguAGGCCG- -5'
18401 5' -54 NC_004681.1 + 59232 0.69 0.704604
Target:  5'- gUCaGCUccUCAacgGUCGAGGUgcaccucagGUCCGGCa -3'
miRNA:   3'- -AGcUGA--AGUga-CAGCUCCG---------UAGGCCG- -5'
18401 5' -54 NC_004681.1 + 61274 0.69 0.692944
Target:  5'- gUGGCgUCGCcGUCGAcccaguugcccugGGCGUCgCGGCg -3'
miRNA:   3'- aGCUGaAGUGaCAGCU-------------CCGUAG-GCCG- -5'
18401 5' -54 NC_004681.1 + 29420 0.7 0.661915
Target:  5'- cUGGCgUCACUGgCGAGGUcgCCucgGGCa -3'
miRNA:   3'- aGCUGaAGUGACaGCUCCGuaGG---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.