miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18401 5' -54 NC_004681.1 + 19066 1.13 0.001168
Target:  5'- cUCGACUUCACUGUCGAGGCAUCCGGCg -3'
miRNA:   3'- -AGCUGAAGUGACAGCUCCGUAGGCCG- -5'
18401 5' -54 NC_004681.1 + 6379 0.76 0.35396
Target:  5'- cCGAUggCGCUGUCGAGGgGgaggaggccCCGGCg -3'
miRNA:   3'- aGCUGaaGUGACAGCUCCgUa--------GGCCG- -5'
18401 5' -54 NC_004681.1 + 45374 0.75 0.379403
Target:  5'- uUCGcCggUCACgggCGGGGCGUCCGGUg -3'
miRNA:   3'- -AGCuGa-AGUGacaGCUCCGUAGGCCG- -5'
18401 5' -54 NC_004681.1 + 12445 0.73 0.462689
Target:  5'- gUGACgaUCACcGUCGAGGCc-CCGGCc -3'
miRNA:   3'- aGCUGa-AGUGaCAGCUCCGuaGGCCG- -5'
18401 5' -54 NC_004681.1 + 73225 0.73 0.482477
Target:  5'- -aGGCUgagGCUGUCGAGGCGga-GGCa -3'
miRNA:   3'- agCUGAag-UGACAGCUCCGUaggCCG- -5'
18401 5' -54 NC_004681.1 + 17798 0.72 0.512898
Target:  5'- gUCGACUggcgaACcGUCGAGGCGUagucgggagcugCCGGUg -3'
miRNA:   3'- -AGCUGAag---UGaCAGCUCCGUA------------GGCCG- -5'
18401 5' -54 NC_004681.1 + 28038 0.71 0.618796
Target:  5'- cCGACggCGCUggcgcuggcgGUCGAGGCGguggCGGCa -3'
miRNA:   3'- aGCUGaaGUGA----------CAGCUCCGUag--GCCG- -5'
18401 5' -54 NC_004681.1 + 29420 0.7 0.661915
Target:  5'- cUGGCgUCACUGgCGAGGUcgCCucgGGCa -3'
miRNA:   3'- aGCUGaAGUGACaGCUCCGuaGG---CCG- -5'
18401 5' -54 NC_004681.1 + 61274 0.69 0.692944
Target:  5'- gUGGCgUCGCcGUCGAcccaguugcccugGGCGUCgCGGCg -3'
miRNA:   3'- aGCUGaAGUGaCAGCU-------------CCGUAG-GCCG- -5'
18401 5' -54 NC_004681.1 + 59232 0.69 0.704604
Target:  5'- gUCaGCUccUCAacgGUCGAGGUgcaccucagGUCCGGCa -3'
miRNA:   3'- -AGcUGA--AGUga-CAGCUCCG---------UAGGCCG- -5'
18401 5' -54 NC_004681.1 + 65810 0.68 0.746202
Target:  5'- gUCGGCcUCGCUGagGAGGuCAUgagCGGCc -3'
miRNA:   3'- -AGCUGaAGUGACagCUCC-GUAg--GCCG- -5'
18401 5' -54 NC_004681.1 + 53778 0.68 0.746202
Target:  5'- aCuGCUUCAUgggGUCGGuGguUCCGGCg -3'
miRNA:   3'- aGcUGAAGUGa--CAGCUcCguAGGCCG- -5'
18401 5' -54 NC_004681.1 + 60659 0.67 0.805054
Target:  5'- gUCGGCca-GCggccCGAGGCGUgCGGCg -3'
miRNA:   3'- -AGCUGaagUGaca-GCUCCGUAgGCCG- -5'
18401 5' -54 NC_004681.1 + 32001 0.67 0.813395
Target:  5'- aUCGGC-UCGCUGaUCGGcgccgcgggugucGGCAcggCCGGUg -3'
miRNA:   3'- -AGCUGaAGUGAC-AGCU-------------CCGUa--GGCCG- -5'
18401 5' -54 NC_004681.1 + 57894 0.67 0.814313
Target:  5'- cUCGGCggCGCggcgcgugGUCGcGGUcUCCGGUg -3'
miRNA:   3'- -AGCUGaaGUGa-------CAGCuCCGuAGGCCG- -5'
18401 5' -54 NC_004681.1 + 48538 0.67 0.814313
Target:  5'- --uACUUCACgGUCGAGcGCga-CGGCa -3'
miRNA:   3'- agcUGAAGUGaCAGCUC-CGuagGCCG- -5'
18401 5' -54 NC_004681.1 + 29437 0.67 0.814313
Target:  5'- aCGAg-UCGCUGUCGAGGUcgaaGGUg -3'
miRNA:   3'- aGCUgaAGUGACAGCUCCGuaggCCG- -5'
18401 5' -54 NC_004681.1 + 35795 0.67 0.823389
Target:  5'- cCGACUcCAUUG-CGGGGCG--CGGCc -3'
miRNA:   3'- aGCUGAaGUGACaGCUCCGUagGCCG- -5'
18401 5' -54 NC_004681.1 + 69654 0.67 0.840951
Target:  5'- gUCGGCcuuuucacgUCACUugcaGUCGGGGCA--CGGCc -3'
miRNA:   3'- -AGCUGa--------AGUGA----CAGCUCCGUagGCCG- -5'
18401 5' -54 NC_004681.1 + 9102 0.66 0.84942
Target:  5'- cCGGCgcCGCUGgcUCG-GGC-UCUGGCg -3'
miRNA:   3'- aGCUGaaGUGAC--AGCuCCGuAGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.