miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 3' -56.8 NC_004681.1 + 64909 0.68 0.603039
Target:  5'- --aUCUCUCCCGCGgcgcCCGCcuggAGCAcgagguGGCg -3'
miRNA:   3'- acaGGAGAGGGUGCa---GGCG----UCGU------UCG- -5'
18402 3' -56.8 NC_004681.1 + 60162 0.68 0.603039
Target:  5'- cGUCCUCgauggCCACGgucagCCGguGcCAGGUg -3'
miRNA:   3'- aCAGGAGag---GGUGCa----GGCguC-GUUCG- -5'
18402 3' -56.8 NC_004681.1 + 75198 0.68 0.603039
Target:  5'- gGUUCUCU-UCugGUCUGCGGUGAGg -3'
miRNA:   3'- aCAGGAGAgGGugCAGGCGUCGUUCg -5'
18402 3' -56.8 NC_004681.1 + 31600 0.68 0.588157
Target:  5'- cGUCCUCUUCaguuguaACGgaaaugccaagcgCCGCAGCGAauuGCg -3'
miRNA:   3'- aCAGGAGAGGg------UGCa------------GGCGUCGUU---CG- -5'
18402 3' -56.8 NC_004681.1 + 36181 0.69 0.560714
Target:  5'- aG-CgUUUCCCGCGcCCGCAGCc-GCu -3'
miRNA:   3'- aCaGgAGAGGGUGCaGGCGUCGuuCG- -5'
18402 3' -56.8 NC_004681.1 + 48359 0.69 0.559664
Target:  5'- gGUCUUCUcggucagCCCGCGUgcCCGUaucggacuGGCGAGCc -3'
miRNA:   3'- aCAGGAGA-------GGGUGCA--GGCG--------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 38126 0.69 0.550249
Target:  5'- gGcCCUCggCCUACGUUgGCgagucauucGGCAAGCg -3'
miRNA:   3'- aCaGGAGa-GGGUGCAGgCG---------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 40944 0.69 0.550249
Target:  5'- gGUCCgUCUCCUccagcaGCaUCUGCAGCAuGGCc -3'
miRNA:   3'- aCAGG-AGAGGG------UGcAGGCGUCGU-UCG- -5'
18402 3' -56.8 NC_004681.1 + 1654 0.69 0.529508
Target:  5'- -uUCCUCUCCCcCG-CCGCccAGCugaAGGCu -3'
miRNA:   3'- acAGGAGAGGGuGCaGGCG--UCG---UUCG- -5'
18402 3' -56.8 NC_004681.1 + 65719 0.69 0.529508
Target:  5'- uUGUCCUCg-CCACG-CCacuugGCGGCgAAGCa -3'
miRNA:   3'- -ACAGGAGagGGUGCaGG-----CGUCG-UUCG- -5'
18402 3' -56.8 NC_004681.1 + 36812 0.69 0.509062
Target:  5'- aGUCCUCUUugucgCCGCGggCCGUGGCu-GCu -3'
miRNA:   3'- aCAGGAGAG-----GGUGCa-GGCGUCGuuCG- -5'
18402 3' -56.8 NC_004681.1 + 35161 0.7 0.498964
Target:  5'- --aCCgagcCUgCCAcugugguugcCGUCCGCGGCGAGCa -3'
miRNA:   3'- acaGGa---GAgGGU----------GCAGGCGUCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 2283 0.7 0.469228
Target:  5'- aUGUCgUCUCCCGCGcaCUGCGccGCGAcGCu -3'
miRNA:   3'- -ACAGgAGAGGGUGCa-GGCGU--CGUU-CG- -5'
18402 3' -56.8 NC_004681.1 + 14341 0.71 0.444208
Target:  5'- gGUUCUCagCCCGCGUCagcucagccugguaGCGGCGuAGCg -3'
miRNA:   3'- aCAGGAGa-GGGUGCAGg-------------CGUCGU-UCG- -5'
18402 3' -56.8 NC_004681.1 + 73930 0.71 0.440426
Target:  5'- cGUCCgCUCCacggaGCaUCCGC-GCGAGCa -3'
miRNA:   3'- aCAGGaGAGGg----UGcAGGCGuCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 19232 1.12 0.000596
Target:  5'- aUGUCCUCUCCCACGUCCGCAGCAAGCg -3'
miRNA:   3'- -ACAGGAGAGGGUGCAGGCGUCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.