miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 3' -56.8 NC_004681.1 + 1654 0.69 0.529508
Target:  5'- -uUCCUCUCCCcCG-CCGCccAGCugaAGGCu -3'
miRNA:   3'- acAGGAGAGGGuGCaGGCG--UCG---UUCG- -5'
18402 3' -56.8 NC_004681.1 + 2283 0.7 0.469228
Target:  5'- aUGUCgUCUCCCGCGcaCUGCGccGCGAcGCu -3'
miRNA:   3'- -ACAGgAGAGGGUGCa-GGCGU--CGUU-CG- -5'
18402 3' -56.8 NC_004681.1 + 8388 0.66 0.688239
Target:  5'- cGUCCUUggCgGCGUCCGCGcCAccgaGGCu -3'
miRNA:   3'- aCAGGAGagGgUGCAGGCGUcGU----UCG- -5'
18402 3' -56.8 NC_004681.1 + 8819 0.66 0.740147
Target:  5'- gGUCCcggCUUCaGCGaCCGCGGC-GGCg -3'
miRNA:   3'- aCAGGa--GAGGgUGCaGGCGUCGuUCG- -5'
18402 3' -56.8 NC_004681.1 + 10858 0.66 0.740147
Target:  5'- cGaCCUCUCCCGCGguucaCGCuGGCcugauugcgaAAGCu -3'
miRNA:   3'- aCaGGAGAGGGUGCag---GCG-UCG----------UUCG- -5'
18402 3' -56.8 NC_004681.1 + 12099 0.68 0.603039
Target:  5'- gGUCCg--CCCgcGCGUCuCGCugaccaaggucGGCAAGCa -3'
miRNA:   3'- aCAGGagaGGG--UGCAG-GCG-----------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 14341 0.71 0.444208
Target:  5'- gGUUCUCagCCCGCGUCagcucagccugguaGCGGCGuAGCg -3'
miRNA:   3'- aCAGGAGa-GGGUGCAGg-------------CGUCGU-UCG- -5'
18402 3' -56.8 NC_004681.1 + 17470 0.67 0.645736
Target:  5'- gGUCCUCgaCCGCG-CUGgAGCAgucGGCg -3'
miRNA:   3'- aCAGGAGagGGUGCaGGCgUCGU---UCG- -5'
18402 3' -56.8 NC_004681.1 + 19232 1.12 0.000596
Target:  5'- aUGUCCUCUCCCACGUCCGCAGCAAGCg -3'
miRNA:   3'- -ACAGGAGAGGGUGCAGGCGUCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 19708 0.66 0.719619
Target:  5'- cGUCaUCgaCCACG-CCGCAGCGcGCc -3'
miRNA:   3'- aCAGgAGagGGUGCaGGCGUCGUuCG- -5'
18402 3' -56.8 NC_004681.1 + 22841 0.67 0.656403
Target:  5'- aUGaUCCUCaucCCCGCGUUCGaCAGCGc-- -3'
miRNA:   3'- -AC-AGGAGa--GGGUGCAGGC-GUCGUucg -5'
18402 3' -56.8 NC_004681.1 + 24831 0.67 0.677665
Target:  5'- cGaCCUCaUCgGCGUCgGCGGCGcgGGCg -3'
miRNA:   3'- aCaGGAGaGGgUGCAGgCGUCGU--UCG- -5'
18402 3' -56.8 NC_004681.1 + 26128 0.66 0.698763
Target:  5'- aGUCUgaUCCUgaagGCgGUgCGCGGCAAGCa -3'
miRNA:   3'- aCAGGagAGGG----UG-CAgGCGUCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 26213 0.66 0.698763
Target:  5'- cGUCCUggCCCGCcaCgGCGGCGAuGCc -3'
miRNA:   3'- aCAGGAgaGGGUGcaGgCGUCGUU-CG- -5'
18402 3' -56.8 NC_004681.1 + 30659 0.67 0.645736
Target:  5'- -----aUUCCCGCGgacgCCGCGGuCAAGCu -3'
miRNA:   3'- acaggaGAGGGUGCa---GGCGUC-GUUCG- -5'
18402 3' -56.8 NC_004681.1 + 31600 0.68 0.588157
Target:  5'- cGUCCUCUUCaguuguaACGgaaaugccaagcgCCGCAGCGAauuGCg -3'
miRNA:   3'- aCAGGAGAGGg------UGCa------------GGCGUCGUU---CG- -5'
18402 3' -56.8 NC_004681.1 + 35161 0.7 0.498964
Target:  5'- --aCCgagcCUgCCAcugugguugcCGUCCGCGGCGAGCa -3'
miRNA:   3'- acaGGa---GAgGGU----------GCAGGCGUCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 35537 0.67 0.667049
Target:  5'- aUGUCgaacCCCACGUCUGCGccguuGUAGGCg -3'
miRNA:   3'- -ACAGgagaGGGUGCAGGCGU-----CGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 36181 0.69 0.560714
Target:  5'- aG-CgUUUCCCGCGcCCGCAGCc-GCu -3'
miRNA:   3'- aCaGgAGAGGGUGCaGGCGUCGuuCG- -5'
18402 3' -56.8 NC_004681.1 + 36812 0.69 0.509062
Target:  5'- aGUCCUCUUugucgCCGCGggCCGUGGCu-GCu -3'
miRNA:   3'- aCAGGAGAG-----GGUGCa-GGCGUCGuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.