miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 3' -56.8 NC_004681.1 + 37725 0.67 0.677665
Target:  5'- cGUCgCUCUCCUGUGUgCGCAGCu--- -3'
miRNA:   3'- aCAG-GAGAGGGUGCAgGCGUCGuucg -5'
18402 3' -56.8 NC_004681.1 + 38126 0.69 0.550249
Target:  5'- gGcCCUCggCCUACGUUgGCgagucauucGGCAAGCg -3'
miRNA:   3'- aCaGGAGa-GGGUGCAGgCG---------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 40944 0.69 0.550249
Target:  5'- gGUCCgUCUCCUccagcaGCaUCUGCAGCAuGGCc -3'
miRNA:   3'- aCAGG-AGAGGG------UGcAGGCGUCGU-UCG- -5'
18402 3' -56.8 NC_004681.1 + 48359 0.69 0.559664
Target:  5'- gGUCUUCUcggucagCCCGCGUgcCCGUaucggacuGGCGAGCc -3'
miRNA:   3'- aCAGGAGA-------GGGUGCA--GGCG--------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 51005 0.67 0.624375
Target:  5'- aGggCUCUCCCGUGUCCGaCucgaguauuGGCAGGCc -3'
miRNA:   3'- aCagGAGAGGGUGCAGGC-G---------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 54289 0.67 0.635056
Target:  5'- gGUCCUCgCCCACcUCaagaGCGGCAc-- -3'
miRNA:   3'- aCAGGAGaGGGUGcAGg---CGUCGUucg -5'
18402 3' -56.8 NC_004681.1 + 57327 0.66 0.719619
Target:  5'- aGUCCaCUaccgccgcaagCUCGCGUaCCGCGGgGAGCc -3'
miRNA:   3'- aCAGGaGA-----------GGGUGCA-GGCGUCgUUCG- -5'
18402 3' -56.8 NC_004681.1 + 60162 0.68 0.603039
Target:  5'- cGUCCUCgauggCCACGgucagCCGguGcCAGGUg -3'
miRNA:   3'- aCAGGAGag---GGUGCa----GGCguC-GUUCG- -5'
18402 3' -56.8 NC_004681.1 + 64909 0.68 0.603039
Target:  5'- --aUCUCUCCCGCGgcgcCCGCcuggAGCAcgagguGGCg -3'
miRNA:   3'- acaGGAGAGGGUGCa---GGCG----UCGU------UCG- -5'
18402 3' -56.8 NC_004681.1 + 65719 0.69 0.529508
Target:  5'- uUGUCCUCg-CCACG-CCacuugGCGGCgAAGCa -3'
miRNA:   3'- -ACAGGAGagGGUGCaGG-----CGUCG-UUCG- -5'
18402 3' -56.8 NC_004681.1 + 70363 0.68 0.613699
Target:  5'- aGUCCUCcgUgCCACaGUgCGC-GCGAGCc -3'
miRNA:   3'- aCAGGAG--AgGGUG-CAgGCGuCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 70830 0.68 0.613699
Target:  5'- gUGUCacggUCUCCacgcucaGCGgCCGCAGCAuGCc -3'
miRNA:   3'- -ACAGg---AGAGGg------UGCaGGCGUCGUuCG- -5'
18402 3' -56.8 NC_004681.1 + 71590 0.66 0.719619
Target:  5'- aGUCCUCUgCaAUGUCCuCGcGCGAGUa -3'
miRNA:   3'- aCAGGAGAgGgUGCAGGcGU-CGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 73930 0.71 0.440426
Target:  5'- cGUCCgCUCCacggaGCaUCCGC-GCGAGCa -3'
miRNA:   3'- aCAGGaGAGGg----UGcAGGCGuCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 75198 0.68 0.603039
Target:  5'- gGUUCUCU-UCugGUCUGCGGUGAGg -3'
miRNA:   3'- aCAGGAGAgGGugCAGGCGUCGUUCg -5'
18402 3' -56.8 NC_004681.1 + 75600 0.66 0.709227
Target:  5'- aG-CCUCUggcguaugagCUCGCGUCUGCugAGCGGGUa -3'
miRNA:   3'- aCaGGAGA----------GGGUGCAGGCG--UCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.