Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 75600 | 0.66 | 0.709227 |
Target: 5'- aG-CCUCUggcguaugagCUCGCGUCUGCugAGCGGGUa -3' miRNA: 3'- aCaGGAGA----------GGGUGCAGGCG--UCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 75198 | 0.68 | 0.603039 |
Target: 5'- gGUUCUCU-UCugGUCUGCGGUGAGg -3' miRNA: 3'- aCAGGAGAgGGugCAGGCGUCGUUCg -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 73930 | 0.71 | 0.440426 |
Target: 5'- cGUCCgCUCCacggaGCaUCCGC-GCGAGCa -3' miRNA: 3'- aCAGGaGAGGg----UGcAGGCGuCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 71590 | 0.66 | 0.719619 |
Target: 5'- aGUCCUCUgCaAUGUCCuCGcGCGAGUa -3' miRNA: 3'- aCAGGAGAgGgUGCAGGcGU-CGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 70830 | 0.68 | 0.613699 |
Target: 5'- gUGUCacggUCUCCacgcucaGCGgCCGCAGCAuGCc -3' miRNA: 3'- -ACAGg---AGAGGg------UGCaGGCGUCGUuCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 70363 | 0.68 | 0.613699 |
Target: 5'- aGUCCUCcgUgCCACaGUgCGC-GCGAGCc -3' miRNA: 3'- aCAGGAG--AgGGUG-CAgGCGuCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 65719 | 0.69 | 0.529508 |
Target: 5'- uUGUCCUCg-CCACG-CCacuugGCGGCgAAGCa -3' miRNA: 3'- -ACAGGAGagGGUGCaGG-----CGUCG-UUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 64909 | 0.68 | 0.603039 |
Target: 5'- --aUCUCUCCCGCGgcgcCCGCcuggAGCAcgagguGGCg -3' miRNA: 3'- acaGGAGAGGGUGCa---GGCG----UCGU------UCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 60162 | 0.68 | 0.603039 |
Target: 5'- cGUCCUCgauggCCACGgucagCCGguGcCAGGUg -3' miRNA: 3'- aCAGGAGag---GGUGCa----GGCguC-GUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 57327 | 0.66 | 0.719619 |
Target: 5'- aGUCCaCUaccgccgcaagCUCGCGUaCCGCGGgGAGCc -3' miRNA: 3'- aCAGGaGA-----------GGGUGCA-GGCGUCgUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 54289 | 0.67 | 0.635056 |
Target: 5'- gGUCCUCgCCCACcUCaagaGCGGCAc-- -3' miRNA: 3'- aCAGGAGaGGGUGcAGg---CGUCGUucg -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 51005 | 0.67 | 0.624375 |
Target: 5'- aGggCUCUCCCGUGUCCGaCucgaguauuGGCAGGCc -3' miRNA: 3'- aCagGAGAGGGUGCAGGC-G---------UCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 48359 | 0.69 | 0.559664 |
Target: 5'- gGUCUUCUcggucagCCCGCGUgcCCGUaucggacuGGCGAGCc -3' miRNA: 3'- aCAGGAGA-------GGGUGCA--GGCG--------UCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 40944 | 0.69 | 0.550249 |
Target: 5'- gGUCCgUCUCCUccagcaGCaUCUGCAGCAuGGCc -3' miRNA: 3'- aCAGG-AGAGGG------UGcAGGCGUCGU-UCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 38126 | 0.69 | 0.550249 |
Target: 5'- gGcCCUCggCCUACGUUgGCgagucauucGGCAAGCg -3' miRNA: 3'- aCaGGAGa-GGGUGCAGgCG---------UCGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 37725 | 0.67 | 0.677665 |
Target: 5'- cGUCgCUCUCCUGUGUgCGCAGCu--- -3' miRNA: 3'- aCAG-GAGAGGGUGCAgGCGUCGuucg -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 36812 | 0.69 | 0.509062 |
Target: 5'- aGUCCUCUUugucgCCGCGggCCGUGGCu-GCu -3' miRNA: 3'- aCAGGAGAG-----GGUGCa-GGCGUCGuuCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 36181 | 0.69 | 0.560714 |
Target: 5'- aG-CgUUUCCCGCGcCCGCAGCc-GCu -3' miRNA: 3'- aCaGgAGAGGGUGCaGGCGUCGuuCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 35537 | 0.67 | 0.667049 |
Target: 5'- aUGUCgaacCCCACGUCUGCGccguuGUAGGCg -3' miRNA: 3'- -ACAGgagaGGGUGCAGGCGU-----CGUUCG- -5' |
|||||||
18402 | 3' | -56.8 | NC_004681.1 | + | 35161 | 0.7 | 0.498964 |
Target: 5'- --aCCgagcCUgCCAcugugguugcCGUCCGCGGCGAGCa -3' miRNA: 3'- acaGGa---GAgGGU----------GCAGGCGUCGUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home