miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 3' -56.8 NC_004681.1 + 35161 0.7 0.498964
Target:  5'- --aCCgagcCUgCCAcugugguugcCGUCCGCGGCGAGCa -3'
miRNA:   3'- acaGGa---GAgGGU----------GCAGGCGUCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 14341 0.71 0.444208
Target:  5'- gGUUCUCagCCCGCGUCagcucagccugguaGCGGCGuAGCg -3'
miRNA:   3'- aCAGGAGa-GGGUGCAGg-------------CGUCGU-UCG- -5'
18402 3' -56.8 NC_004681.1 + 70363 0.68 0.613699
Target:  5'- aGUCCUCcgUgCCACaGUgCGC-GCGAGCc -3'
miRNA:   3'- aCAGGAG--AgGGUG-CAgGCGuCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 60162 0.68 0.603039
Target:  5'- cGUCCUCgauggCCACGgucagCCGguGcCAGGUg -3'
miRNA:   3'- aCAGGAGag---GGUGCa----GGCguC-GUUCG- -5'
18402 3' -56.8 NC_004681.1 + 31600 0.68 0.588157
Target:  5'- cGUCCUCUUCaguuguaACGgaaaugccaagcgCCGCAGCGAauuGCg -3'
miRNA:   3'- aCAGGAGAGGg------UGCa------------GGCGUCGUU---CG- -5'
18402 3' -56.8 NC_004681.1 + 48359 0.69 0.559664
Target:  5'- gGUCUUCUcggucagCCCGCGUgcCCGUaucggacuGGCGAGCc -3'
miRNA:   3'- aCAGGAGA-------GGGUGCA--GGCG--------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 8819 0.66 0.740147
Target:  5'- gGUCCcggCUUCaGCGaCCGCGGC-GGCg -3'
miRNA:   3'- aCAGGa--GAGGgUGCaGGCGUCGuUCG- -5'
18402 3' -56.8 NC_004681.1 + 8388 0.66 0.688239
Target:  5'- cGUCCUUggCgGCGUCCGCGcCAccgaGGCu -3'
miRNA:   3'- aCAGGAGagGgUGCAGGCGUcGU----UCG- -5'
18402 3' -56.8 NC_004681.1 + 17470 0.67 0.645736
Target:  5'- gGUCCUCgaCCGCG-CUGgAGCAgucGGCg -3'
miRNA:   3'- aCAGGAGagGGUGCaGGCgUCGU---UCG- -5'
18402 3' -56.8 NC_004681.1 + 75198 0.68 0.603039
Target:  5'- gGUUCUCU-UCugGUCUGCGGUGAGg -3'
miRNA:   3'- aCAGGAGAgGGugCAGGCGUCGUUCg -5'
18402 3' -56.8 NC_004681.1 + 65719 0.69 0.529508
Target:  5'- uUGUCCUCg-CCACG-CCacuugGCGGCgAAGCa -3'
miRNA:   3'- -ACAGGAGagGGUGCaGG-----CGUCG-UUCG- -5'
18402 3' -56.8 NC_004681.1 + 75600 0.66 0.709227
Target:  5'- aG-CCUCUggcguaugagCUCGCGUCUGCugAGCGGGUa -3'
miRNA:   3'- aCaGGAGA----------GGGUGCAGGCG--UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 1654 0.69 0.529508
Target:  5'- -uUCCUCUCCCcCG-CCGCccAGCugaAGGCu -3'
miRNA:   3'- acAGGAGAGGGuGCaGGCG--UCG---UUCG- -5'
18402 3' -56.8 NC_004681.1 + 51005 0.67 0.624375
Target:  5'- aGggCUCUCCCGUGUCCGaCucgaguauuGGCAGGCc -3'
miRNA:   3'- aCagGAGAGGGUGCAGGC-G---------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 19708 0.66 0.719619
Target:  5'- cGUCaUCgaCCACG-CCGCAGCGcGCc -3'
miRNA:   3'- aCAGgAGagGGUGCaGGCGUCGUuCG- -5'
18402 3' -56.8 NC_004681.1 + 38126 0.69 0.550249
Target:  5'- gGcCCUCggCCUACGUUgGCgagucauucGGCAAGCg -3'
miRNA:   3'- aCaGGAGa-GGGUGCAGgCG---------UCGUUCG- -5'
18402 3' -56.8 NC_004681.1 + 2283 0.7 0.469228
Target:  5'- aUGUCgUCUCCCGCGcaCUGCGccGCGAcGCu -3'
miRNA:   3'- -ACAGgAGAGGGUGCa-GGCGU--CGUU-CG- -5'
18402 3' -56.8 NC_004681.1 + 26213 0.66 0.698763
Target:  5'- cGUCCUggCCCGCcaCgGCGGCGAuGCc -3'
miRNA:   3'- aCAGGAgaGGGUGcaGgCGUCGUU-CG- -5'
18402 3' -56.8 NC_004681.1 + 24831 0.67 0.677665
Target:  5'- cGaCCUCaUCgGCGUCgGCGGCGcgGGCg -3'
miRNA:   3'- aCaGGAGaGGgUGCAGgCGUCGU--UCG- -5'
18402 3' -56.8 NC_004681.1 + 37725 0.67 0.677665
Target:  5'- cGUCgCUCUCCUGUGUgCGCAGCu--- -3'
miRNA:   3'- aCAG-GAGAGGGUGCAgGCGUCGuucg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.