miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 61181 0.66 0.84942
Target:  5'- -aACCgcagcucgGGGuCgGCGGUCAGCGugcCGACg -3'
miRNA:   3'- agUGGa-------CCU-GgCGCCAGUUGUu--GCUG- -5'
18402 5' -54.6 NC_004681.1 + 45165 0.66 0.84942
Target:  5'- -gGCCUcGACCGCGG-CGgauGCuuCGGCg -3'
miRNA:   3'- agUGGAcCUGGCGCCaGU---UGuuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 31610 0.66 0.849419
Target:  5'- gUCACCUGGACgaggGUGuaaUCGACAccugguGCGGCa -3'
miRNA:   3'- -AGUGGACCUGg---CGCc--AGUUGU------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13852 0.66 0.849419
Target:  5'- gUCACCaaGACCGCGaugCGugAagGCGACu -3'
miRNA:   3'- -AGUGGacCUGGCGCca-GUugU--UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 61772 0.66 0.840951
Target:  5'- -gACCUcGGCgGCGGccuccgCGGCGGCGGCu -3'
miRNA:   3'- agUGGAcCUGgCGCCa-----GUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 18471 0.66 0.840951
Target:  5'- cCGCCUGGcCUGCcauGUCGAUGGCGcCa -3'
miRNA:   3'- aGUGGACCuGGCGc--CAGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 67469 0.66 0.84095
Target:  5'- cCAUCaggGGAgCGCGGUgAGCGggACGAUu -3'
miRNA:   3'- aGUGGa--CCUgGCGCCAgUUGU--UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 41653 0.66 0.84095
Target:  5'- aCGCCUacuacGuGACCauguucagcGCGGUCGGCAuCGGCu -3'
miRNA:   3'- aGUGGA-----C-CUGG---------CGCCAGUUGUuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 6303 0.66 0.84095
Target:  5'- -gGCCU--GCCGCGGUCG--GAUGACc -3'
miRNA:   3'- agUGGAccUGGCGCCAGUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 65264 0.66 0.832271
Target:  5'- aUCGCCUGccUUGUGGUCGuCcGCGACa -3'
miRNA:   3'- -AGUGGACcuGGCGCCAGUuGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 61857 0.66 0.832271
Target:  5'- -gGCCgaugGcGGCCGCGGUCugguggcgcGCGAgGGCg -3'
miRNA:   3'- agUGGa---C-CUGGCGCCAGu--------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 21431 0.66 0.832271
Target:  5'- aCGCC---GCUGCGGUCGACcacguccACGACg -3'
miRNA:   3'- aGUGGaccUGGCGCCAGUUGu------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 17897 0.66 0.832271
Target:  5'- --uCCUGGGCgGCGG-CGGCGAgGGu -3'
miRNA:   3'- aguGGACCUGgCGCCaGUUGUUgCUg -5'
18402 5' -54.6 NC_004681.1 + 17815 0.66 0.823389
Target:  5'- gCugCUuGACCGCGGccgUCGACuGGCGAa -3'
miRNA:   3'- aGugGAcCUGGCGCC---AGUUG-UUGCUg -5'
18402 5' -54.6 NC_004681.1 + 32281 0.66 0.823388
Target:  5'- -gACCUGGGg-GUGGagcUCAACGGCGACc -3'
miRNA:   3'- agUGGACCUggCGCC---AGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 39173 0.66 0.823388
Target:  5'- gCAUCcGGGCCGCGGagaugcucgcccUCGACGuCGAg -3'
miRNA:   3'- aGUGGaCCUGGCGCC------------AGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 26842 0.66 0.817966
Target:  5'- gUUACCUgGGACCGCagugggccGGUCcccaccgccaccuauGGCGGCGAg -3'
miRNA:   3'- -AGUGGA-CCUGGCG--------CCAG---------------UUGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 75529 0.66 0.814313
Target:  5'- gCACgUGGGCUGCGccgCGAguACGGCc -3'
miRNA:   3'- aGUGgACCUGGCGCca-GUUguUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9147 0.66 0.814313
Target:  5'- cCGCCgcgGaGAUCGCGGagAACGucuuCGACg -3'
miRNA:   3'- aGUGGa--C-CUGGCGCCagUUGUu---GCUG- -5'
18402 5' -54.6 NC_004681.1 + 2108 0.66 0.814313
Target:  5'- cCACCUGG-CCGCGGcCG--GAUGGg -3'
miRNA:   3'- aGUGGACCuGGCGCCaGUugUUGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.