Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18402 | 5' | -54.6 | NC_004681.1 | + | 41653 | 0.66 | 0.84095 |
Target: 5'- aCGCCUacuacGuGACCauguucagcGCGGUCGGCAuCGGCu -3' miRNA: 3'- aGUGGA-----C-CUGG---------CGCCAGUUGUuGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 17897 | 0.66 | 0.832271 |
Target: 5'- --uCCUGGGCgGCGG-CGGCGAgGGu -3' miRNA: 3'- aguGGACCUGgCGCCaGUUGUUgCUg -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 65264 | 0.66 | 0.832271 |
Target: 5'- aUCGCCUGccUUGUGGUCGuCcGCGACa -3' miRNA: 3'- -AGUGGACcuGGCGCCAGUuGuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 27973 | 0.67 | 0.776272 |
Target: 5'- gUCACugcucuCUGGAgCCaacgGCGG-CAACGGCGGCa -3' miRNA: 3'- -AGUG------GACCU-GG----CGCCaGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 21075 | 0.67 | 0.786023 |
Target: 5'- -aGCCUGGuucggcACCGCGcUgAugAGCGACg -3' miRNA: 3'- agUGGACC------UGGCGCcAgUugUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 54867 | 0.67 | 0.776272 |
Target: 5'- aCGCCaaggacGACCGCGG-CAACAGCuGCc -3' miRNA: 3'- aGUGGac----CUGGCGCCaGUUGUUGcUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 27039 | 0.67 | 0.776272 |
Target: 5'- gUCGCCUucGaGuCCGUGGUCGGCGuCGAg -3' miRNA: 3'- -AGUGGA--C-CuGGCGCCAGUUGUuGCUg -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 520 | 0.67 | 0.776272 |
Target: 5'- cCAUCUuccGcGGCCGCGaGUCccuCAACGACg -3' miRNA: 3'- aGUGGA---C-CUGGCGC-CAGuu-GUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 50363 | 0.67 | 0.776272 |
Target: 5'- -gGCUgugGGA-CGUGGUCGAgGGCGGCu -3' miRNA: 3'- agUGGa--CCUgGCGCCAGUUgUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 39235 | 0.67 | 0.786023 |
Target: 5'- cUCACCgUGcGCCGCGG-CAAgGGCGcCa -3' miRNA: 3'- -AGUGG-ACcUGGCGCCaGUUgUUGCuG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 39055 | 0.67 | 0.795621 |
Target: 5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3' miRNA: 3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 25203 | 0.67 | 0.79562 |
Target: 5'- -gGCgCUGGcaACgGCGGcgaccgcuucuUCAACAACGGCg -3' miRNA: 3'- agUG-GACC--UGgCGCC-----------AGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 9987 | 0.67 | 0.786023 |
Target: 5'- ---aCUGcGGCCGCaaguucgaucuGGUCGAgGACGACg -3' miRNA: 3'- agugGAC-CUGGCG-----------CCAGUUgUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 68842 | 0.67 | 0.763384 |
Target: 5'- -gGCCUGGcgugccacugacacACCGCGGUgc-CAGCGAUc -3' miRNA: 3'- agUGGACC--------------UGGCGCCAguuGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 9849 | 0.67 | 0.776273 |
Target: 5'- ----gUGGACCGCGGggaugauCAGCGGCu -3' miRNA: 3'- aguggACCUGGCGCCaguu---GUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 59073 | 0.67 | 0.786023 |
Target: 5'- gCACCUGGGCgGCcuGGUUGAUuucuucgauaGAUGGCa -3' miRNA: 3'- aGUGGACCUGgCG--CCAGUUG----------UUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32362 | 0.68 | 0.729737 |
Target: 5'- gUCACCgauccGGcCCGCGG-CGaguggaacucggaccACAACGGCa -3' miRNA: 3'- -AGUGGa----CCuGGCGCCaGU---------------UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 65194 | 0.68 | 0.711981 |
Target: 5'- cCACCUGGA-CGCcuggugggagGGUCAggauaucgaccccgACAGCGGCc -3' miRNA: 3'- aGUGGACCUgGCG----------CCAGU--------------UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 25099 | 0.68 | 0.715132 |
Target: 5'- gCACCUcGGuugGCCGCGGaccCAccccgcuggaguACAACGACg -3' miRNA: 3'- aGUGGA-CC---UGGCGCCa--GU------------UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 22403 | 0.68 | 0.725581 |
Target: 5'- gUCACCccGGCCGCGGaCGGCAACc-- -3' miRNA: 3'- -AGUGGacCUGGCGCCaGUUGUUGcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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