miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 19267 1.11 0.001352
Target:  5'- uUCACCUGGACCGCGGUCAACAACGACg -3'
miRNA:   3'- -AGUGGACCUGGCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 67027 0.81 0.144892
Target:  5'- gCACCaGGGCCGCcacagaGUCAACGACGACg -3'
miRNA:   3'- aGUGGaCCUGGCGc-----CAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12485 0.78 0.215744
Target:  5'- aCACCUucaagGuGACCGCGGaaggCAGCAACGGCg -3'
miRNA:   3'- aGUGGA-----C-CUGGCGCCa---GUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9309 0.76 0.314292
Target:  5'- aCGCCUacGGcaACC-CGGUCAACGGCGGCa -3'
miRNA:   3'- aGUGGA--CC--UGGcGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 43811 0.75 0.337679
Target:  5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3'
miRNA:   3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 20122 0.75 0.345751
Target:  5'- cCGuCCUGGucuCCGCGGuUCGACAGCGcCa -3'
miRNA:   3'- aGU-GGACCu--GGCGCC-AGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 30136 0.74 0.406044
Target:  5'- -gGCCgauGGCCGCGG-CGGCGAUGACg -3'
miRNA:   3'- agUGGac-CUGGCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 41246 0.73 0.415181
Target:  5'- -uGCUUGGACUcaGUgGGUCGACAAUGACg -3'
miRNA:   3'- agUGGACCUGG--CG-CCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 58590 0.73 0.424444
Target:  5'- gCGCCUGGACugccuCGCGGUUcAC-GCGGCg -3'
miRNA:   3'- aGUGGACCUG-----GCGCCAGuUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 16073 0.73 0.43383
Target:  5'- gCAUCUGGACCGCGGg----GAUGGCa -3'
miRNA:   3'- aGUGGACCUGGCGCCaguugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12996 0.73 0.452955
Target:  5'- aCACCgcUGGcACCGCGGaCGACGuggccGCGACu -3'
miRNA:   3'- aGUGG--ACC-UGGCGCCaGUUGU-----UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 51816 0.72 0.482477
Target:  5'- -aGCCUGGucuucuCCGUGGagAugGACGACg -3'
miRNA:   3'- agUGGACCu-----GGCGCCagUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25941 0.72 0.4895
Target:  5'- gUCACCUGuGAUgaUGCGGUCGggcgucuucaaugaGCAGCGAg -3'
miRNA:   3'- -AGUGGAC-CUG--GCGCCAGU--------------UGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 27745 0.72 0.502666
Target:  5'- cCACCUauucgGuGACgCGCGG-CAGCGGCGGCa -3'
miRNA:   3'- aGUGGA-----C-CUG-GCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 6595 0.72 0.502666
Target:  5'- gCGCCaUGGGCCGCGG-CAAgGACa-- -3'
miRNA:   3'- aGUGG-ACCUGGCGCCaGUUgUUGcug -5'
18402 5' -54.6 NC_004681.1 + 60563 0.71 0.523214
Target:  5'- aCGCCUcGGGCCGCuGGcCGACGAacguggugcuCGACg -3'
miRNA:   3'- aGUGGA-CCUGGCG-CCaGUUGUU----------GCUG- -5'
18402 5' -54.6 NC_004681.1 + 19601 0.71 0.523214
Target:  5'- -aGCuCUGGGCgcgcugcggCGUGGUCGAUGACGGCg -3'
miRNA:   3'- agUG-GACCUG---------GCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13310 0.71 0.523214
Target:  5'- -aGCCUGGAgaUCGaGGcCGACAACGGCg -3'
miRNA:   3'- agUGGACCU--GGCgCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 3689 0.71 0.523215
Target:  5'- uUCACC-GGACUGUucaccGUCAGCGACGAg -3'
miRNA:   3'- -AGUGGaCCUGGCGc----CAGUUGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 61166 0.71 0.53361
Target:  5'- aCGCCcagGGcaACUG-GGUCGACGGCGACg -3'
miRNA:   3'- aGUGGa--CC--UGGCgCCAGUUGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.