miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 44790 0.66 0.814313
Target:  5'- --cUCUGGACCGCccuggaGGUgGGCAagaccuACGACa -3'
miRNA:   3'- aguGGACCUGGCG------CCAgUUGU------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 28119 0.66 0.814313
Target:  5'- cCAgCgacGGccCCGCGGgCAACGGCGGCg -3'
miRNA:   3'- aGUgGa--CCu-GGCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9147 0.66 0.814313
Target:  5'- cCGCCgcgGaGAUCGCGGagAACGucuuCGACg -3'
miRNA:   3'- aGUGGa--C-CUGGCGCCagUUGUu---GCUG- -5'
18402 5' -54.6 NC_004681.1 + 39055 0.67 0.795621
Target:  5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3'
miRNA:   3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5'
18402 5' -54.6 NC_004681.1 + 25203 0.67 0.79562
Target:  5'- -gGCgCUGGcaACgGCGGcgaccgcuucuUCAACAACGGCg -3'
miRNA:   3'- agUG-GACC--UGgCGCC-----------AGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 59073 0.67 0.786023
Target:  5'- gCACCUGGGCgGCcuGGUUGAUuucuucgauaGAUGGCa -3'
miRNA:   3'- aGUGGACCUGgCG--CCAGUUG----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9987 0.67 0.786023
Target:  5'- ---aCUGcGGCCGCaaguucgaucuGGUCGAgGACGACg -3'
miRNA:   3'- agugGAC-CUGGCG-----------CCAGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 21075 0.67 0.786023
Target:  5'- -aGCCUGGuucggcACCGCGcUgAugAGCGACg -3'
miRNA:   3'- agUGGACC------UGGCGCcAgUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 39235 0.67 0.786023
Target:  5'- cUCACCgUGcGCCGCGG-CAAgGGCGcCa -3'
miRNA:   3'- -AGUGG-ACcUGGCGCCaGUUgUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 9849 0.67 0.776273
Target:  5'- ----gUGGACCGCGGggaugauCAGCGGCu -3'
miRNA:   3'- aguggACCUGGCGCCaguu---GUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27973 0.67 0.776272
Target:  5'- gUCACugcucuCUGGAgCCaacgGCGG-CAACGGCGGCa -3'
miRNA:   3'- -AGUG------GACCU-GG----CGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27039 0.67 0.776272
Target:  5'- gUCGCCUucGaGuCCGUGGUCGGCGuCGAg -3'
miRNA:   3'- -AGUGGA--C-CuGGCGCCAGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 50363 0.67 0.776272
Target:  5'- -gGCUgugGGA-CGUGGUCGAgGGCGGCu -3'
miRNA:   3'- agUGGa--CCUgGCGCCAGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 520 0.67 0.776272
Target:  5'- cCAUCUuccGcGGCCGCGaGUCccuCAACGACg -3'
miRNA:   3'- aGUGGA---C-CUGGCGC-CAGuu-GUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 54867 0.67 0.776272
Target:  5'- aCGCCaaggacGACCGCGG-CAACAGCuGCc -3'
miRNA:   3'- aGUGGac----CUGGCGCCaGUUGUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 68842 0.67 0.763384
Target:  5'- -gGCCUGGcgugccacugacacACCGCGGUgc-CAGCGAUc -3'
miRNA:   3'- agUGGACC--------------UGGCGCCAguuGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 49121 0.68 0.750275
Target:  5'- gUCGCUUGGAgugcgaauuCCGCgaugcgcgugacgauGG-CAGCGGCGACa -3'
miRNA:   3'- -AGUGGACCU---------GGCG---------------CCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 59726 0.68 0.746202
Target:  5'- aCACUcGGAacCUG-GGUCGGCAGCGAUg -3'
miRNA:   3'- aGUGGaCCU--GGCgCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 15162 0.68 0.746202
Target:  5'- aUCGCC-GGuCUGCucgguGUCGACAugGACg -3'
miRNA:   3'- -AGUGGaCCuGGCGc----CAGUUGUugCUG- -5'
18402 5' -54.6 NC_004681.1 + 3753 0.68 0.735942
Target:  5'- cCAUCUGGGCgGCGacGUCGaagGCGAgGGCg -3'
miRNA:   3'- aGUGGACCUGgCGC--CAGU---UGUUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.