miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 30991 0.68 0.735942
Target:  5'- -gACCUGGACUggGCGcaCAACuACGACu -3'
miRNA:   3'- agUGGACCUGG--CGCcaGUUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32362 0.68 0.729737
Target:  5'- gUCACCgauccGGcCCGCGG-CGaguggaacucggaccACAACGGCa -3'
miRNA:   3'- -AGUGGa----CCuGGCGCCaGU---------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 22403 0.68 0.725581
Target:  5'- gUCACCccGGCCGCGGaCGGCAACc-- -3'
miRNA:   3'- -AGUGGacCUGGCGCCaGUUGUUGcug -5'
18402 5' -54.6 NC_004681.1 + 25099 0.68 0.715132
Target:  5'- gCACCUcGGuugGCCGCGGaccCAccccgcuggaguACAACGACg -3'
miRNA:   3'- aGUGGA-CC---UGGCGCCa--GU------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 65194 0.68 0.711981
Target:  5'- cCACCUGGA-CGCcuggugggagGGUCAggauaucgaccccgACAGCGGCc -3'
miRNA:   3'- aGUGGACCUgGCG----------CCAGU--------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13360 0.68 0.704604
Target:  5'- -gGCCUGGA-CGCGGaauUCGGCGagcuugacGCGGCg -3'
miRNA:   3'- agUGGACCUgGCGCC---AGUUGU--------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 368 0.68 0.704603
Target:  5'- cCGCgaGGAcgagcCCGCGGUCAagaccugggGCAAgGGCa -3'
miRNA:   3'- aGUGgaCCU-----GGCGCCAGU---------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 32153 0.69 0.694007
Target:  5'- cCAgCUGGACCGCgucaaggaGGUCGugAAC-ACg -3'
miRNA:   3'- aGUgGACCUGGCG--------CCAGUugUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 15912 0.69 0.683353
Target:  5'- aUCGCCgUGG-CCGCGGUCAAgacCAuccaGGCc -3'
miRNA:   3'- -AGUGG-ACCuGGCGCCAGUU---GUug--CUG- -5'
18402 5' -54.6 NC_004681.1 + 66015 0.69 0.67158
Target:  5'- cCACCgugagGGACCuuGCGGUCGcccaggaucaugcGCGAgGACc -3'
miRNA:   3'- aGUGGa----CCUGG--CGCCAGU-------------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 60052 0.69 0.65115
Target:  5'- gCACCUGGcaccggcugACCGUGGcCAuCGAgGACg -3'
miRNA:   3'- aGUGGACC---------UGGCGCCaGUuGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 17711 0.69 0.65115
Target:  5'- uUCGCCagucgacGGCCGCGGUCAAgCAGC-ACa -3'
miRNA:   3'- -AGUGGac-----CUGGCGCCAGUU-GUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 18693 0.69 0.65115
Target:  5'- cCGCCUGGACCucucGUCAACAuCGAg -3'
miRNA:   3'- aGUGGACCUGGcgc-CAGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 21325 0.69 0.640369
Target:  5'- aUCGuCgUGGA-CGUGGUCGaccGCAGCGGCg -3'
miRNA:   3'- -AGU-GgACCUgGCGCCAGU---UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27604 0.69 0.639291
Target:  5'- gCGCCUGGgucACCcucgguggcgcugGCGG-CGGCGGCGGCu -3'
miRNA:   3'- aGUGGACC---UGG-------------CGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 24812 0.7 0.629581
Target:  5'- cCGCaUGGGCCaacGCGGUCGACcucaucggcgucGGCGGCg -3'
miRNA:   3'- aGUGgACCUGG---CGCCAGUUG------------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 28505 0.7 0.629581
Target:  5'- cUCACCccGGGcacccCCGCGGUCAucuCcACGGCa -3'
miRNA:   3'- -AGUGGa-CCU-----GGCGCCAGUu--GuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 16019 0.7 0.618796
Target:  5'- -gGCCUGGAuggucuugaCCGCGGcC-ACGGCGAUc -3'
miRNA:   3'- agUGGACCU---------GGCGCCaGuUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32106 0.7 0.618795
Target:  5'- gUCACCggcauccaGGAa-GCGGUCAccGCGGCGGCc -3'
miRNA:   3'- -AGUGGa-------CCUggCGCCAGU--UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12227 0.7 0.608021
Target:  5'- uUCGCCUugaaGGACUGCuugccgaccuuGGUCAGCGA-GACg -3'
miRNA:   3'- -AGUGGA----CCUGGCG-----------CCAGUUGUUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.