miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 368 0.68 0.704603
Target:  5'- cCGCgaGGAcgagcCCGCGGUCAagaccugggGCAAgGGCa -3'
miRNA:   3'- aGUGgaCCU-----GGCGCCAGU---------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 520 0.67 0.776272
Target:  5'- cCAUCUuccGcGGCCGCGaGUCccuCAACGACg -3'
miRNA:   3'- aGUGGA---C-CUGGCGC-CAGuu-GUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 2108 0.66 0.814313
Target:  5'- cCACCUGG-CCGCGGcCG--GAUGGg -3'
miRNA:   3'- aGUGGACCuGGCGCCaGUugUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 2524 0.71 0.57585
Target:  5'- aUCGCCUGGAuugagcUCGCGcG-CAAgAACGGCa -3'
miRNA:   3'- -AGUGGACCU------GGCGC-CaGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 3689 0.71 0.523215
Target:  5'- uUCACC-GGACUGUucaccGUCAGCGACGAg -3'
miRNA:   3'- -AGUGGaCCUGGCGc----CAGUUGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 3753 0.68 0.735942
Target:  5'- cCAUCUGGGCgGCGacGUCGaagGCGAgGGCg -3'
miRNA:   3'- aGUGGACCUGgCGC--CAGU---UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 6052 0.71 0.554612
Target:  5'- gCAUCUccACCGCGGUCAacuGCAGCGGa -3'
miRNA:   3'- aGUGGAccUGGCGCCAGU---UGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 6303 0.66 0.84095
Target:  5'- -gGCCU--GCCGCGGUCG--GAUGACc -3'
miRNA:   3'- agUGGAccUGGCGCCAGUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 6595 0.72 0.502666
Target:  5'- gCGCCaUGGGCCGCGG-CAAgGACa-- -3'
miRNA:   3'- aGUGG-ACCUGGCGCCaGUUgUUGcug -5'
18402 5' -54.6 NC_004681.1 + 9147 0.66 0.814313
Target:  5'- cCGCCgcgGaGAUCGCGGagAACGucuuCGACg -3'
miRNA:   3'- aGUGGa--C-CUGGCGCCagUUGUu---GCUG- -5'
18402 5' -54.6 NC_004681.1 + 9309 0.76 0.314292
Target:  5'- aCGCCUacGGcaACC-CGGUCAACGGCGGCa -3'
miRNA:   3'- aGUGGA--CC--UGGcGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9849 0.67 0.776273
Target:  5'- ----gUGGACCGCGGggaugauCAGCGGCu -3'
miRNA:   3'- aguggACCUGGCGCCaguu---GUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9987 0.67 0.786023
Target:  5'- ---aCUGcGGCCGCaaguucgaucuGGUCGAgGACGACg -3'
miRNA:   3'- agugGAC-CUGGCG-----------CCAGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12227 0.7 0.608021
Target:  5'- uUCGCCUugaaGGACUGCuugccgaccuuGGUCAGCGA-GACg -3'
miRNA:   3'- -AGUGGA----CCUGGCG-----------CCAGUUGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 12485 0.78 0.215744
Target:  5'- aCACCUucaagGuGACCGCGGaaggCAGCAACGGCg -3'
miRNA:   3'- aGUGGA-----C-CUGGCGCCa---GUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12996 0.73 0.452955
Target:  5'- aCACCgcUGGcACCGCGGaCGACGuggccGCGACu -3'
miRNA:   3'- aGUGG--ACC-UGGCGCCaGUUGU-----UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13310 0.71 0.523214
Target:  5'- -aGCCUGGAgaUCGaGGcCGACAACGGCg -3'
miRNA:   3'- agUGGACCU--GGCgCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13360 0.68 0.704604
Target:  5'- -gGCCUGGA-CGCGGaauUCGGCGagcuugacGCGGCg -3'
miRNA:   3'- agUGGACCUgGCGCC---AGUUGU--------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13415 0.71 0.544078
Target:  5'- -gGCCUGGACCGUGaG-CAGCuguucgaugagAACGGCg -3'
miRNA:   3'- agUGGACCUGGCGC-CaGUUG-----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13852 0.66 0.849419
Target:  5'- gUCACCaaGACCGCGaugCGugAagGCGACu -3'
miRNA:   3'- -AGUGGacCUGGCGCca-GUugU--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.