miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 15162 0.68 0.746202
Target:  5'- aUCGCC-GGuCUGCucgguGUCGACAugGACg -3'
miRNA:   3'- -AGUGGaCCuGGCGc----CAGUUGUugCUG- -5'
18402 5' -54.6 NC_004681.1 + 15912 0.69 0.683353
Target:  5'- aUCGCCgUGG-CCGCGGUCAAgacCAuccaGGCc -3'
miRNA:   3'- -AGUGG-ACCuGGCGCCAGUU---GUug--CUG- -5'
18402 5' -54.6 NC_004681.1 + 16019 0.7 0.618796
Target:  5'- -gGCCUGGAuggucuugaCCGCGGcC-ACGGCGAUc -3'
miRNA:   3'- agUGGACCU---------GGCGCCaGuUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 16073 0.73 0.43383
Target:  5'- gCAUCUGGACCGCGGg----GAUGGCa -3'
miRNA:   3'- aGUGGACCUGGCGCCaguugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 17711 0.69 0.65115
Target:  5'- uUCGCCagucgacGGCCGCGGUCAAgCAGC-ACa -3'
miRNA:   3'- -AGUGGac-----CUGGCGCCAGUU-GUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 17815 0.66 0.823389
Target:  5'- gCugCUuGACCGCGGccgUCGACuGGCGAa -3'
miRNA:   3'- aGugGAcCUGGCGCC---AGUUG-UUGCUg -5'
18402 5' -54.6 NC_004681.1 + 17897 0.66 0.832271
Target:  5'- --uCCUGGGCgGCGG-CGGCGAgGGu -3'
miRNA:   3'- aguGGACCUGgCGCCaGUUGUUgCUg -5'
18402 5' -54.6 NC_004681.1 + 18471 0.66 0.840951
Target:  5'- cCGCCUGGcCUGCcauGUCGAUGGCGcCa -3'
miRNA:   3'- aGUGGACCuGGCGc--CAGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 18693 0.69 0.65115
Target:  5'- cCGCCUGGACCucucGUCAACAuCGAg -3'
miRNA:   3'- aGUGGACCUGGcgc-CAGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 19267 1.11 0.001352
Target:  5'- uUCACCUGGACCGCGGUCAACAACGACg -3'
miRNA:   3'- -AGUGGACCUGGCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 19601 0.71 0.523214
Target:  5'- -aGCuCUGGGCgcgcugcggCGUGGUCGAUGACGGCg -3'
miRNA:   3'- agUG-GACCUG---------GCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 20122 0.75 0.345751
Target:  5'- cCGuCCUGGucuCCGCGGuUCGACAGCGcCa -3'
miRNA:   3'- aGU-GGACCu--GGCGCC-AGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 21075 0.67 0.786023
Target:  5'- -aGCCUGGuucggcACCGCGcUgAugAGCGACg -3'
miRNA:   3'- agUGGACC------UGGCGCcAgUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 21325 0.69 0.640369
Target:  5'- aUCGuCgUGGA-CGUGGUCGaccGCAGCGGCg -3'
miRNA:   3'- -AGU-GgACCUgGCGCCAGU---UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 21431 0.66 0.832271
Target:  5'- aCGCC---GCUGCGGUCGACcacguccACGACg -3'
miRNA:   3'- aGUGGaccUGGCGCCAGUUGu------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 22403 0.68 0.725581
Target:  5'- gUCACCccGGCCGCGGaCGGCAACc-- -3'
miRNA:   3'- -AGUGGacCUGGCGCCaGUUGUUGcug -5'
18402 5' -54.6 NC_004681.1 + 24812 0.7 0.629581
Target:  5'- cCGCaUGGGCCaacGCGGUCGACcucaucggcgucGGCGGCg -3'
miRNA:   3'- aGUGgACCUGG---CGCCAGUUG------------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25099 0.68 0.715132
Target:  5'- gCACCUcGGuugGCCGCGGaccCAccccgcuggaguACAACGACg -3'
miRNA:   3'- aGUGGA-CC---UGGCGCCa--GU------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25203 0.67 0.79562
Target:  5'- -gGCgCUGGcaACgGCGGcgaccgcuucuUCAACAACGGCg -3'
miRNA:   3'- agUG-GACC--UGgCGCC-----------AGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25941 0.72 0.4895
Target:  5'- gUCACCUGuGAUgaUGCGGUCGggcgucuucaaugaGCAGCGAg -3'
miRNA:   3'- -AGUGGAC-CUG--GCGCCAGU--------------UGUUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.