miRNA display CGI


Results 41 - 60 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 26842 0.66 0.817966
Target:  5'- gUUACCUgGGACCGCagugggccGGUCcccaccgccaccuauGGCGGCGAg -3'
miRNA:   3'- -AGUGGA-CCUGGCG--------CCAG---------------UUGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 27039 0.67 0.776272
Target:  5'- gUCGCCUucGaGuCCGUGGUCGGCGuCGAg -3'
miRNA:   3'- -AGUGGA--C-CuGGCGCCAGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 27604 0.69 0.639291
Target:  5'- gCGCCUGGgucACCcucgguggcgcugGCGG-CGGCGGCGGCu -3'
miRNA:   3'- aGUGGACC---UGG-------------CGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27745 0.72 0.502666
Target:  5'- cCACCUauucgGuGACgCGCGG-CAGCGGCGGCa -3'
miRNA:   3'- aGUGGA-----C-CUG-GCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27973 0.67 0.776272
Target:  5'- gUCACugcucuCUGGAgCCaacgGCGG-CAACGGCGGCa -3'
miRNA:   3'- -AGUG------GACCU-GG----CGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 28119 0.66 0.814313
Target:  5'- cCAgCgacGGccCCGCGGgCAACGGCGGCg -3'
miRNA:   3'- aGUgGa--CCu-GGCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 28505 0.7 0.629581
Target:  5'- cUCACCccGGGcacccCCGCGGUCAucuCcACGGCa -3'
miRNA:   3'- -AGUGGa-CCU-----GGCGCCAGUu--GuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 30136 0.74 0.406044
Target:  5'- -gGCCgauGGCCGCGG-CGGCGAUGACg -3'
miRNA:   3'- agUGGac-CUGGCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 30991 0.68 0.735942
Target:  5'- -gACCUGGACUggGCGcaCAACuACGACu -3'
miRNA:   3'- agUGGACCUGG--CGCcaGUUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 31610 0.66 0.849419
Target:  5'- gUCACCUGGACgaggGUGuaaUCGACAccugguGCGGCa -3'
miRNA:   3'- -AGUGGACCUGg---CGCc--AGUUGU------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32106 0.7 0.618795
Target:  5'- gUCACCggcauccaGGAa-GCGGUCAccGCGGCGGCc -3'
miRNA:   3'- -AGUGGa-------CCUggCGCCAGU--UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32153 0.69 0.694007
Target:  5'- cCAgCUGGACCGCgucaaggaGGUCGugAAC-ACg -3'
miRNA:   3'- aGUgGACCUGGCG--------CCAGUugUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 32281 0.66 0.823388
Target:  5'- -gACCUGGGg-GUGGagcUCAACGGCGACc -3'
miRNA:   3'- agUGGACCUggCGCC---AGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32362 0.68 0.729737
Target:  5'- gUCACCgauccGGcCCGCGG-CGaguggaacucggaccACAACGGCa -3'
miRNA:   3'- -AGUGGa----CCuGGCGCCaGU---------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 39055 0.67 0.795621
Target:  5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3'
miRNA:   3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5'
18402 5' -54.6 NC_004681.1 + 39173 0.66 0.823388
Target:  5'- gCAUCcGGGCCGCGGagaugcucgcccUCGACGuCGAg -3'
miRNA:   3'- aGUGGaCCUGGCGCC------------AGUUGUuGCUg -5'
18402 5' -54.6 NC_004681.1 + 39235 0.67 0.786023
Target:  5'- cUCACCgUGcGCCGCGG-CAAgGGCGcCa -3'
miRNA:   3'- -AGUGG-ACcUGGCGCCaGUUgUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 41246 0.73 0.415181
Target:  5'- -uGCUUGGACUcaGUgGGUCGACAAUGACg -3'
miRNA:   3'- agUGGACCUGG--CG-CCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 41653 0.66 0.84095
Target:  5'- aCGCCUacuacGuGACCauguucagcGCGGUCGGCAuCGGCu -3'
miRNA:   3'- aGUGGA-----C-CUGG---------CGCCAGUUGUuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 43811 0.75 0.337679
Target:  5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3'
miRNA:   3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.