miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 75529 0.66 0.814313
Target:  5'- gCACgUGGGCUGCGccgCGAguACGGCc -3'
miRNA:   3'- aGUGgACCUGGCGCca-GUUguUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 68842 0.67 0.763384
Target:  5'- -gGCCUGGcgugccacugacacACCGCGGUgc-CAGCGAUc -3'
miRNA:   3'- agUGGACC--------------UGGCGCCAguuGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 67469 0.66 0.84095
Target:  5'- cCAUCaggGGAgCGCGGUgAGCGggACGAUu -3'
miRNA:   3'- aGUGGa--CCUgGCGCCAgUUGU--UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 67027 0.81 0.144892
Target:  5'- gCACCaGGGCCGCcacagaGUCAACGACGACg -3'
miRNA:   3'- aGUGGaCCUGGCGc-----CAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 66015 0.69 0.67158
Target:  5'- cCACCgugagGGACCuuGCGGUCGcccaggaucaugcGCGAgGACc -3'
miRNA:   3'- aGUGGa----CCUGG--CGCCAGU-------------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 65264 0.66 0.832271
Target:  5'- aUCGCCUGccUUGUGGUCGuCcGCGACa -3'
miRNA:   3'- -AGUGGACcuGGCGCCAGUuGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 65194 0.68 0.711981
Target:  5'- cCACCUGGA-CGCcuggugggagGGUCAggauaucgaccccgACAGCGGCc -3'
miRNA:   3'- aGUGGACCUgGCG----------CCAGU--------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 61857 0.66 0.832271
Target:  5'- -gGCCgaugGcGGCCGCGGUCugguggcgcGCGAgGGCg -3'
miRNA:   3'- agUGGa---C-CUGGCGCCAGu--------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 61772 0.66 0.840951
Target:  5'- -gACCUcGGCgGCGGccuccgCGGCGGCGGCu -3'
miRNA:   3'- agUGGAcCUGgCGCCa-----GUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 61181 0.66 0.84942
Target:  5'- -aACCgcagcucgGGGuCgGCGGUCAGCGugcCGACg -3'
miRNA:   3'- agUGGa-------CCU-GgCGCCAGUUGUu--GCUG- -5'
18402 5' -54.6 NC_004681.1 + 61166 0.71 0.53361
Target:  5'- aCGCCcagGGcaACUG-GGUCGACGGCGACg -3'
miRNA:   3'- aGUGGa--CC--UGGCgCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 60563 0.71 0.523214
Target:  5'- aCGCCUcGGGCCGCuGGcCGACGAacguggugcuCGACg -3'
miRNA:   3'- aGUGGA-CCUGGCG-CCaGUUGUU----------GCUG- -5'
18402 5' -54.6 NC_004681.1 + 60052 0.69 0.65115
Target:  5'- gCACCUGGcaccggcugACCGUGGcCAuCGAgGACg -3'
miRNA:   3'- aGUGGACC---------UGGCGCCaGUuGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 59726 0.68 0.746202
Target:  5'- aCACUcGGAacCUG-GGUCGGCAGCGAUg -3'
miRNA:   3'- aGUGGaCCU--GGCgCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 59073 0.67 0.786023
Target:  5'- gCACCUGGGCgGCcuGGUUGAUuucuucgauaGAUGGCa -3'
miRNA:   3'- aGUGGACCUGgCG--CCAGUUG----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 58590 0.73 0.424444
Target:  5'- gCGCCUGGACugccuCGCGGUUcAC-GCGGCg -3'
miRNA:   3'- aGUGGACCUG-----GCGCCAGuUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 57882 0.66 0.814313
Target:  5'- gCGCgUGG-UCGCGGUCucCggUGGCg -3'
miRNA:   3'- aGUGgACCuGGCGCCAGuuGuuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 56218 0.71 0.565204
Target:  5'- -gGCCUGGACCG-GcGUCGACccgAGCGAg -3'
miRNA:   3'- agUGGACCUGGCgC-CAGUUG---UUGCUg -5'
18402 5' -54.6 NC_004681.1 + 54867 0.67 0.776272
Target:  5'- aCGCCaaggacGACCGCGG-CAACAGCuGCc -3'
miRNA:   3'- aGUGGac----CUGGCGCCaGUUGUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 54297 0.71 0.544078
Target:  5'- aUCAUCUugcGGAgguagUCGCGGUUGAUGACGACa -3'
miRNA:   3'- -AGUGGA---CCU-----GGCGCCAGUUGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.