Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18402 | 5' | -54.6 | NC_004681.1 | + | 51816 | 0.72 | 0.482477 |
Target: 5'- -aGCCUGGucuucuCCGUGGagAugGACGACg -3' miRNA: 3'- agUGGACCu-----GGCGCCagUugUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 50363 | 0.67 | 0.776272 |
Target: 5'- -gGCUgugGGA-CGUGGUCGAgGGCGGCu -3' miRNA: 3'- agUGGa--CCUgGCGCCAGUUgUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 49121 | 0.68 | 0.750275 |
Target: 5'- gUCGCUUGGAgugcgaauuCCGCgaugcgcgugacgauGG-CAGCGGCGACa -3' miRNA: 3'- -AGUGGACCU---------GGCG---------------CCaGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 45165 | 0.66 | 0.84942 |
Target: 5'- -gGCCUcGACCGCGG-CGgauGCuuCGGCg -3' miRNA: 3'- agUGGAcCUGGCGCCaGU---UGuuGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 44790 | 0.66 | 0.814313 |
Target: 5'- --cUCUGGACCGCccuggaGGUgGGCAagaccuACGACa -3' miRNA: 3'- aguGGACCUGGCG------CCAgUUGU------UGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 43811 | 0.75 | 0.337679 |
Target: 5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3' miRNA: 3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 41653 | 0.66 | 0.84095 |
Target: 5'- aCGCCUacuacGuGACCauguucagcGCGGUCGGCAuCGGCu -3' miRNA: 3'- aGUGGA-----C-CUGG---------CGCCAGUUGUuGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 41246 | 0.73 | 0.415181 |
Target: 5'- -uGCUUGGACUcaGUgGGUCGACAAUGACg -3' miRNA: 3'- agUGGACCUGG--CG-CCAGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 39235 | 0.67 | 0.786023 |
Target: 5'- cUCACCgUGcGCCGCGG-CAAgGGCGcCa -3' miRNA: 3'- -AGUGG-ACcUGGCGCCaGUUgUUGCuG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 39173 | 0.66 | 0.823388 |
Target: 5'- gCAUCcGGGCCGCGGagaugcucgcccUCGACGuCGAg -3' miRNA: 3'- aGUGGaCCUGGCGCC------------AGUUGUuGCUg -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 39055 | 0.67 | 0.795621 |
Target: 5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3' miRNA: 3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32362 | 0.68 | 0.729737 |
Target: 5'- gUCACCgauccGGcCCGCGG-CGaguggaacucggaccACAACGGCa -3' miRNA: 3'- -AGUGGa----CCuGGCGCCaGU---------------UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32281 | 0.66 | 0.823388 |
Target: 5'- -gACCUGGGg-GUGGagcUCAACGGCGACc -3' miRNA: 3'- agUGGACCUggCGCC---AGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32153 | 0.69 | 0.694007 |
Target: 5'- cCAgCUGGACCGCgucaaggaGGUCGugAAC-ACg -3' miRNA: 3'- aGUgGACCUGGCG--------CCAGUugUUGcUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32106 | 0.7 | 0.618795 |
Target: 5'- gUCACCggcauccaGGAa-GCGGUCAccGCGGCGGCc -3' miRNA: 3'- -AGUGGa-------CCUggCGCCAGU--UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 31610 | 0.66 | 0.849419 |
Target: 5'- gUCACCUGGACgaggGUGuaaUCGACAccugguGCGGCa -3' miRNA: 3'- -AGUGGACCUGg---CGCc--AGUUGU------UGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 30991 | 0.68 | 0.735942 |
Target: 5'- -gACCUGGACUggGCGcaCAACuACGACu -3' miRNA: 3'- agUGGACCUGG--CGCcaGUUGuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 30136 | 0.74 | 0.406044 |
Target: 5'- -gGCCgauGGCCGCGG-CGGCGAUGACg -3' miRNA: 3'- agUGGac-CUGGCGCCaGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 28505 | 0.7 | 0.629581 |
Target: 5'- cUCACCccGGGcacccCCGCGGUCAucuCcACGGCa -3' miRNA: 3'- -AGUGGa-CCU-----GGCGCCAGUu--GuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 28119 | 0.66 | 0.814313 |
Target: 5'- cCAgCgacGGccCCGCGGgCAACGGCGGCg -3' miRNA: 3'- aGUgGa--CCu-GGCGCCaGUUGUUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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