miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 17711 0.69 0.65115
Target:  5'- uUCGCCagucgacGGCCGCGGUCAAgCAGC-ACa -3'
miRNA:   3'- -AGUGGac-----CUGGCGCCAGUU-GUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 13415 0.71 0.544078
Target:  5'- -gGCCUGGACCGUGaG-CAGCuguucgaugagAACGGCg -3'
miRNA:   3'- agUGGACCUGGCGC-CaGUUG-----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 56218 0.71 0.565204
Target:  5'- -gGCCUGGACCG-GcGUCGACccgAGCGAg -3'
miRNA:   3'- agUGGACCUGGCgC-CAGUUG---UUGCUg -5'
18402 5' -54.6 NC_004681.1 + 2524 0.71 0.57585
Target:  5'- aUCGCCUGGAuugagcUCGCGcG-CAAgAACGGCa -3'
miRNA:   3'- -AGUGGACCU------GGCGC-CaGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 32106 0.7 0.618795
Target:  5'- gUCACCggcauccaGGAa-GCGGUCAccGCGGCGGCc -3'
miRNA:   3'- -AGUGGa-------CCUggCGCCAGU--UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 28505 0.7 0.629581
Target:  5'- cUCACCccGGGcacccCCGCGGUCAucuCcACGGCa -3'
miRNA:   3'- -AGUGGa-CCU-----GGCGCCAGUu--GuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 24812 0.7 0.629581
Target:  5'- cCGCaUGGGCCaacGCGGUCGACcucaucggcgucGGCGGCg -3'
miRNA:   3'- aGUGgACCUGG---CGCCAGUUG------------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 27604 0.69 0.639291
Target:  5'- gCGCCUGGgucACCcucgguggcgcugGCGG-CGGCGGCGGCu -3'
miRNA:   3'- aGUGGACC---UGG-------------CGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 21325 0.69 0.640369
Target:  5'- aUCGuCgUGGA-CGUGGUCGaccGCAGCGGCg -3'
miRNA:   3'- -AGU-GgACCUgGCGCCAGU---UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 61166 0.71 0.53361
Target:  5'- aCGCCcagGGcaACUG-GGUCGACGGCGACg -3'
miRNA:   3'- aGUGGa--CC--UGGCgCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 60563 0.71 0.523214
Target:  5'- aCGCCUcGGGCCGCuGGcCGACGAacguggugcuCGACg -3'
miRNA:   3'- aGUGGA-CCUGGCG-CCaGUUGUU----------GCUG- -5'
18402 5' -54.6 NC_004681.1 + 19601 0.71 0.523214
Target:  5'- -aGCuCUGGGCgcgcugcggCGUGGUCGAUGACGGCg -3'
miRNA:   3'- agUG-GACCUG---------GCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12485 0.78 0.215744
Target:  5'- aCACCUucaagGuGACCGCGGaaggCAGCAACGGCg -3'
miRNA:   3'- aGUGGA-----C-CUGGCGCCa---GUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9309 0.76 0.314292
Target:  5'- aCGCCUacGGcaACC-CGGUCAACGGCGGCa -3'
miRNA:   3'- aGUGGA--CC--UGGcGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12996 0.73 0.452955
Target:  5'- aCACCgcUGGcACCGCGGaCGACGuggccGCGACu -3'
miRNA:   3'- aGUGG--ACC-UGGCGCCaGUUGU-----UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 51816 0.72 0.482477
Target:  5'- -aGCCUGGucuucuCCGUGGagAugGACGACg -3'
miRNA:   3'- agUGGACCu-----GGCGCCagUugUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25941 0.72 0.4895
Target:  5'- gUCACCUGuGAUgaUGCGGUCGggcgucuucaaugaGCAGCGAg -3'
miRNA:   3'- -AGUGGAC-CUG--GCGCCAGU--------------UGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 6595 0.72 0.502666
Target:  5'- gCGCCaUGGGCCGCGG-CAAgGACa-- -3'
miRNA:   3'- aGUGG-ACCUGGCGCCaGUUgUUGcug -5'
18402 5' -54.6 NC_004681.1 + 27745 0.72 0.502666
Target:  5'- cCACCUauucgGuGACgCGCGG-CAGCGGCGGCa -3'
miRNA:   3'- aGUGGA-----C-CUG-GCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13310 0.71 0.523214
Target:  5'- -aGCCUGGAgaUCGaGGcCGACAACGGCg -3'
miRNA:   3'- agUGGACCU--GGCgCCaGUUGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.