Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18402 | 5' | -54.6 | NC_004681.1 | + | 19267 | 1.11 | 0.001352 |
Target: 5'- uUCACCUGGACCGCGGUCAACAACGACg -3' miRNA: 3'- -AGUGGACCUGGCGCCAGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 13415 | 0.71 | 0.544078 |
Target: 5'- -gGCCUGGACCGUGaG-CAGCuguucgaugagAACGGCg -3' miRNA: 3'- agUGGACCUGGCGC-CaGUUG-----------UUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 56218 | 0.71 | 0.565204 |
Target: 5'- -gGCCUGGACCG-GcGUCGACccgAGCGAg -3' miRNA: 3'- agUGGACCUGGCgC-CAGUUG---UUGCUg -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 2524 | 0.71 | 0.57585 |
Target: 5'- aUCGCCUGGAuugagcUCGCGcG-CAAgAACGGCa -3' miRNA: 3'- -AGUGGACCU------GGCGC-CaGUUgUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 65194 | 0.68 | 0.711981 |
Target: 5'- cCACCUGGA-CGCcuggugggagGGUCAggauaucgaccccgACAGCGGCc -3' miRNA: 3'- aGUGGACCUgGCG----------CCAGU--------------UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 368 | 0.68 | 0.704603 |
Target: 5'- cCGCgaGGAcgagcCCGCGGUCAagaccugggGCAAgGGCa -3' miRNA: 3'- aGUGgaCCU-----GGCGCCAGU---------UGUUgCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32153 | 0.69 | 0.694007 |
Target: 5'- cCAgCUGGACCGCgucaaggaGGUCGugAAC-ACg -3' miRNA: 3'- aGUgGACCUGGCG--------CCAGUugUUGcUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 15912 | 0.69 | 0.683353 |
Target: 5'- aUCGCCgUGG-CCGCGGUCAAgacCAuccaGGCc -3' miRNA: 3'- -AGUGG-ACCuGGCGCCAGUU---GUug--CUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 18693 | 0.69 | 0.65115 |
Target: 5'- cCGCCUGGACCucucGUCAACAuCGAg -3' miRNA: 3'- aGUGGACCUGGcgc-CAGUUGUuGCUg -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 60052 | 0.69 | 0.65115 |
Target: 5'- gCACCUGGcaccggcugACCGUGGcCAuCGAgGACg -3' miRNA: 3'- aGUGGACC---------UGGCGCCaGUuGUUgCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 17711 | 0.69 | 0.65115 |
Target: 5'- uUCGCCagucgacGGCCGCGGUCAAgCAGC-ACa -3' miRNA: 3'- -AGUGGac-----CUGGCGCCAGUU-GUUGcUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 32106 | 0.7 | 0.618795 |
Target: 5'- gUCACCggcauccaGGAa-GCGGUCAccGCGGCGGCc -3' miRNA: 3'- -AGUGGa-------CCUggCGCCAGU--UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 28505 | 0.7 | 0.629581 |
Target: 5'- cUCACCccGGGcacccCCGCGGUCAucuCcACGGCa -3' miRNA: 3'- -AGUGGa-CCU-----GGCGCCAGUu--GuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 24812 | 0.7 | 0.629581 |
Target: 5'- cCGCaUGGGCCaacGCGGUCGACcucaucggcgucGGCGGCg -3' miRNA: 3'- aGUGgACCUGG---CGCCAGUUG------------UUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 27604 | 0.69 | 0.639291 |
Target: 5'- gCGCCUGGgucACCcucgguggcgcugGCGG-CGGCGGCGGCu -3' miRNA: 3'- aGUGGACC---UGG-------------CGCCaGUUGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 21325 | 0.69 | 0.640369 |
Target: 5'- aUCGuCgUGGA-CGUGGUCGaccGCAGCGGCg -3' miRNA: 3'- -AGU-GgACCUgGCGCCAGU---UGUUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 45165 | 0.66 | 0.84942 |
Target: 5'- -gGCCUcGACCGCGG-CGgauGCuuCGGCg -3' miRNA: 3'- agUGGAcCUGGCGCCaGU---UGuuGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 43811 | 0.75 | 0.337679 |
Target: 5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3' miRNA: 3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 20122 | 0.75 | 0.345751 |
Target: 5'- cCGuCCUGGucuCCGCGGuUCGACAGCGcCa -3' miRNA: 3'- aGU-GGACCu--GGCGCC-AGUUGUUGCuG- -5' |
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18402 | 5' | -54.6 | NC_004681.1 | + | 30136 | 0.74 | 0.406044 |
Target: 5'- -gGCCgauGGCCGCGG-CGGCGAUGACg -3' miRNA: 3'- agUGGac-CUGGCGCCaGUUGUUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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