miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 67027 0.81 0.144892
Target:  5'- gCACCaGGGCCGCcacagaGUCAACGACGACg -3'
miRNA:   3'- aGUGGaCCUGGCGc-----CAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 59073 0.67 0.786023
Target:  5'- gCACCUGGGCgGCcuGGUUGAUuucuucgauaGAUGGCa -3'
miRNA:   3'- aGUGGACCUGgCG--CCAGUUG----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 75529 0.66 0.814313
Target:  5'- gCACgUGGGCUGCGccgCGAguACGGCc -3'
miRNA:   3'- aGUGgACCUGGCGCca-GUUguUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 45165 0.66 0.84942
Target:  5'- -gGCCUcGACCGCGG-CGgauGCuuCGGCg -3'
miRNA:   3'- agUGGAcCUGGCGCCaGU---UGuuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 41246 0.73 0.415181
Target:  5'- -uGCUUGGACUcaGUgGGUCGACAAUGACg -3'
miRNA:   3'- agUGGACCUGG--CG-CCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 58590 0.73 0.424444
Target:  5'- gCGCCUGGACugccuCGCGGUUcAC-GCGGCg -3'
miRNA:   3'- aGUGGACCUG-----GCGCCAGuUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 3689 0.71 0.523215
Target:  5'- uUCACC-GGACUGUucaccGUCAGCGACGAg -3'
miRNA:   3'- -AGUGGaCCUGGCGc----CAGUUGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 54297 0.71 0.544078
Target:  5'- aUCAUCUugcGGAgguagUCGCGGUUGAUGACGACa -3'
miRNA:   3'- -AGUGGA---CCU-----GGCGCCAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 16019 0.7 0.618796
Target:  5'- -gGCCUGGAuggucuugaCCGCGGcC-ACGGCGAUc -3'
miRNA:   3'- agUGGACCU---------GGCGCCaGuUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 9849 0.67 0.776273
Target:  5'- ----gUGGACCGCGGggaugauCAGCGGCu -3'
miRNA:   3'- aguggACCUGGCGCCaguu---GUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 13360 0.68 0.704604
Target:  5'- -gGCCUGGA-CGCGGaauUCGGCGagcuugacGCGGCg -3'
miRNA:   3'- agUGGACCUgGCGCC---AGUUGU--------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 12227 0.7 0.608021
Target:  5'- uUCGCCUugaaGGACUGCuugccgaccuuGGUCAGCGA-GACg -3'
miRNA:   3'- -AGUGGA----CCUGGCG-----------CCAGUUGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 43811 0.75 0.337679
Target:  5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3'
miRNA:   3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 3753 0.68 0.735942
Target:  5'- cCAUCUGGGCgGCGacGUCGaagGCGAgGGCg -3'
miRNA:   3'- aGUGGACCUGgCGC--CAGU---UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 20122 0.75 0.345751
Target:  5'- cCGuCCUGGucuCCGCGGuUCGACAGCGcCa -3'
miRNA:   3'- aGU-GGACCu--GGCGCC-AGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 6052 0.71 0.554612
Target:  5'- gCAUCUccACCGCGGUCAacuGCAGCGGa -3'
miRNA:   3'- aGUGGAccUGGCGCCAGU---UGUUGCUg -5'
18402 5' -54.6 NC_004681.1 + 68842 0.67 0.763384
Target:  5'- -gGCCUGGcgugccacugacacACCGCGGUgc-CAGCGAUc -3'
miRNA:   3'- agUGGACC--------------UGGCGCCAguuGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 39055 0.67 0.795621
Target:  5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3'
miRNA:   3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5'
18402 5' -54.6 NC_004681.1 + 30136 0.74 0.406044
Target:  5'- -gGCCgauGGCCGCGG-CGGCGAUGACg -3'
miRNA:   3'- agUGGac-CUGGCGCCaGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 16073 0.73 0.43383
Target:  5'- gCAUCUGGACCGCGGg----GAUGGCa -3'
miRNA:   3'- aGUGGACCUGGCGCCaguugUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.