miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18402 5' -54.6 NC_004681.1 + 61181 0.66 0.84942
Target:  5'- -aACCgcagcucgGGGuCgGCGGUCAGCGugcCGACg -3'
miRNA:   3'- agUGGa-------CCU-GgCGCCAGUUGUu--GCUG- -5'
18402 5' -54.6 NC_004681.1 + 59073 0.67 0.786023
Target:  5'- gCACCUGGGCgGCcuGGUUGAUuucuucgauaGAUGGCa -3'
miRNA:   3'- aGUGGACCUGgCG--CCAGUUG----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 20122 0.75 0.345751
Target:  5'- cCGuCCUGGucuCCGCGGuUCGACAGCGcCa -3'
miRNA:   3'- aGU-GGACCu--GGCGCC-AGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 21431 0.66 0.832271
Target:  5'- aCGCC---GCUGCGGUCGACcacguccACGACg -3'
miRNA:   3'- aGUGGaccUGGCGCCAGUUGu------UGCUG- -5'
18402 5' -54.6 NC_004681.1 + 45165 0.66 0.84942
Target:  5'- -gGCCUcGACCGCGG-CGgauGCuuCGGCg -3'
miRNA:   3'- agUGGAcCUGGCGCCaGU---UGuuGCUG- -5'
18402 5' -54.6 NC_004681.1 + 18471 0.66 0.840951
Target:  5'- cCGCCUGGcCUGCcauGUCGAUGGCGcCa -3'
miRNA:   3'- aGUGGACCuGGCGc--CAGUUGUUGCuG- -5'
18402 5' -54.6 NC_004681.1 + 43811 0.75 0.337679
Target:  5'- uUCACCgaGGGCgGCGGUguACuGCGGCg -3'
miRNA:   3'- -AGUGGa-CCUGgCGCCAguUGuUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 67027 0.81 0.144892
Target:  5'- gCACCaGGGCCGCcacagaGUCAACGACGACg -3'
miRNA:   3'- aGUGGaCCUGGCGc-----CAGUUGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 39055 0.67 0.795621
Target:  5'- aCugCUucACCGCGGUCAGCcGCaGAUg -3'
miRNA:   3'- aGugGAccUGGCGCCAGUUGuUG-CUG- -5'
18402 5' -54.6 NC_004681.1 + 6595 0.72 0.502666
Target:  5'- gCGCCaUGGGCCGCGG-CAAgGACa-- -3'
miRNA:   3'- aGUGG-ACCUGGCGCCaGUUgUUGcug -5'
18402 5' -54.6 NC_004681.1 + 32362 0.68 0.729737
Target:  5'- gUCACCgauccGGcCCGCGG-CGaguggaacucggaccACAACGGCa -3'
miRNA:   3'- -AGUGGa----CCuGGCGCCaGU---------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 2524 0.71 0.57585
Target:  5'- aUCGCCUGGAuugagcUCGCGcG-CAAgAACGGCa -3'
miRNA:   3'- -AGUGGACCU------GGCGC-CaGUUgUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 56218 0.71 0.565204
Target:  5'- -gGCCUGGACCG-GcGUCGACccgAGCGAg -3'
miRNA:   3'- agUGGACCUGGCgC-CAGUUG---UUGCUg -5'
18402 5' -54.6 NC_004681.1 + 13415 0.71 0.544078
Target:  5'- -gGCCUGGACCGUGaG-CAGCuguucgaugagAACGGCg -3'
miRNA:   3'- agUGGACCUGGCGC-CaGUUG-----------UUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 15912 0.69 0.683353
Target:  5'- aUCGCCgUGG-CCGCGGUCAAgacCAuccaGGCc -3'
miRNA:   3'- -AGUGG-ACCuGGCGCCAGUU---GUug--CUG- -5'
18402 5' -54.6 NC_004681.1 + 32153 0.69 0.694007
Target:  5'- cCAgCUGGACCGCgucaaggaGGUCGugAAC-ACg -3'
miRNA:   3'- aGUgGACCUGGCG--------CCAGUugUUGcUG- -5'
18402 5' -54.6 NC_004681.1 + 368 0.68 0.704603
Target:  5'- cCGCgaGGAcgagcCCGCGGUCAagaccugggGCAAgGGCa -3'
miRNA:   3'- aGUGgaCCU-----GGCGCCAGU---------UGUUgCUG- -5'
18402 5' -54.6 NC_004681.1 + 65194 0.68 0.711981
Target:  5'- cCACCUGGA-CGCcuggugggagGGUCAggauaucgaccccgACAGCGGCc -3'
miRNA:   3'- aGUGGACCUgGCG----------CCAGU--------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 25099 0.68 0.715132
Target:  5'- gCACCUcGGuugGCCGCGGaccCAccccgcuggaguACAACGACg -3'
miRNA:   3'- aGUGGA-CC---UGGCGCCa--GU------------UGUUGCUG- -5'
18402 5' -54.6 NC_004681.1 + 22403 0.68 0.725581
Target:  5'- gUCACCccGGCCGCGGaCGGCAACc-- -3'
miRNA:   3'- -AGUGGacCUGGCGCCaGUUGUUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.