Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18404 | 3' | -56.4 | NC_004681.1 | + | 31999 | 0.67 | 0.695616 |
Target: 5'- cCGCgau-GGCGGCCGCCgcgagguaguAGUACUgGCGa -3' miRNA: 3'- -GCGauucUUGCCGGCGG----------UCAUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 64228 | 0.67 | 0.689316 |
Target: 5'- gGC-GAGGAUGGCCGCUGGcaugaaauccccgaACCGCa -3' miRNA: 3'- gCGaUUCUUGCCGGCGGUCa-------------UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 30849 | 0.67 | 0.695616 |
Target: 5'- uCGUgGAGGACGGCaCGCCGc--CCGCc -3' miRNA: 3'- -GCGaUUCUUGCCG-GCGGUcauGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 12243 | 0.67 | 0.706069 |
Target: 5'- gGCUGAGucgGGUgGcCCGGUGCUGUGg -3' miRNA: 3'- gCGAUUCuugCCGgC-GGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 4158 | 0.68 | 0.600119 |
Target: 5'- uCGCUGAGAugGcguuCCGCCAGUucaagcugaACCaGUGg -3' miRNA: 3'- -GCGAUUCUugCc---GGCGGUCA---------UGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 33364 | 0.68 | 0.608617 |
Target: 5'- gGCUGAGAcCGGCCGCgucgcgcgcGCCGUGu -3' miRNA: 3'- gCGAUUCUuGCCGGCGguca-----UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 24961 | 0.68 | 0.610743 |
Target: 5'- uGCUGGuGAgggagccuugGCGGCCGCCGc--CCGCGc -3' miRNA: 3'- gCGAUU-CU----------UGCCGGCGGUcauGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 47088 | 0.68 | 0.653328 |
Target: 5'- cCGCgaacccAAGGACGaGCCGCC---GCCGCu -3' miRNA: 3'- -GCGa-----UUCUUGC-CGGCGGucaUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 62519 | 0.69 | 0.593756 |
Target: 5'- gCGgaGAGGGCGGUgucggcgcccagccaUGCCAGUACC-CGg -3' miRNA: 3'- -GCgaUUCUUGCCG---------------GCGGUCAUGGcGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 51834 | 0.69 | 0.58952 |
Target: 5'- cCGCgccGGGGCGGCCGCCGacgACCa-- -3' miRNA: 3'- -GCGau-UCUUGCCGGCGGUca-UGGcgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 18383 | 0.69 | 0.578955 |
Target: 5'- aGUcGAGGACuGCgGCC-GUGCCGCGc -3' miRNA: 3'- gCGaUUCUUGcCGgCGGuCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 62181 | 0.69 | 0.557955 |
Target: 5'- cCGCccauGGA-GGCCGCCA-UGCCGCGc -3' miRNA: 3'- -GCGauu-CUUgCCGGCGGUcAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 66926 | 0.69 | 0.568431 |
Target: 5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3' miRNA: 3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 40379 | 0.69 | 0.578955 |
Target: 5'- aGC-AAGAGCGGCacCGCCAGcgugGCCGg- -3' miRNA: 3'- gCGaUUCUUGCCG--GCGGUCa---UGGCgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 17761 | 0.69 | 0.577901 |
Target: 5'- cCGgUGAGAGCGGgaucgaaCCGCCAGcggGCCGg- -3' miRNA: 3'- -GCgAUUCUUGCC-------GGCGGUCa--UGGCgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 17699 | 0.69 | 0.557955 |
Target: 5'- aCGCcuc-GACGGuUCGCCAGUcgacgGCCGCGg -3' miRNA: 3'- -GCGauucUUGCC-GGCGGUCA-----UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 63015 | 0.7 | 0.537178 |
Target: 5'- gCGCUGugagccauuGAGCGGCUGgcauuCCAgGUACCGCa -3' miRNA: 3'- -GCGAUu--------CUUGCCGGC-----GGU-CAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 28101 | 0.7 | 0.486534 |
Target: 5'- cCGCUGguAGGACuacuGCCGCCGuUGCCGCc -3' miRNA: 3'- -GCGAU--UCUUGc---CGGCGGUcAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 32227 | 0.7 | 0.50654 |
Target: 5'- uCGUUGGcGugGGCCGCCgcGGUgACCGCu -3' miRNA: 3'- -GCGAUUcUugCCGGCGG--UCA-UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 74878 | 0.7 | 0.526888 |
Target: 5'- gGCUAucgAGAccgugACGGCCGCUGGcuacACCGUGa -3' miRNA: 3'- gCGAU---UCU-----UGCCGGCGGUCa---UGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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