miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18404 3' -56.4 NC_004681.1 + 19796 1.09 0.001318
Target:  5'- cCGCUAAGAACGGCCGCCAGUACCGCGu -3'
miRNA:   3'- -GCGAUUCUUGCCGGCGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 16245 0.86 0.053757
Target:  5'- aGCgacGGGAUGGCCGCCAGcGCCGCGa -3'
miRNA:   3'- gCGau-UCUUGCCGGCGGUCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 65118 0.76 0.24394
Target:  5'- gCGCccugAAGuACGGCCGCCAcaacUACCGCGu -3'
miRNA:   3'- -GCGa---UUCuUGCCGGCGGUc---AUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 73276 0.74 0.319222
Target:  5'- uGCcGGGAggugcGCGGCUggaguGCCAGUACUGCGg -3'
miRNA:   3'- gCGaUUCU-----UGCCGG-----CGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 30246 0.72 0.401694
Target:  5'- cCGCcacAGcGGCGGCgGCCGGUACgGCGu -3'
miRNA:   3'- -GCGau-UC-UUGCCGgCGGUCAUGgCGC- -5'
18404 3' -56.4 NC_004681.1 + 58650 0.72 0.410655
Target:  5'- uGCgcc--ACGGCCGCCuGcGCCGCGg -3'
miRNA:   3'- gCGauucuUGCCGGCGGuCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 2034 0.72 0.410655
Target:  5'- uCGUgGAGGGCGGCCGC----ACCGCGg -3'
miRNA:   3'- -GCGaUUCUUGCCGGCGgucaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 5787 0.72 0.418825
Target:  5'- gGCgauguggAAGAACgcuGGCCGCCccaaccuGGUACUGCGg -3'
miRNA:   3'- gCGa------UUCUUG---CCGGCGG-------UCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 70948 0.71 0.46594
Target:  5'- gGCUGAGGcaugcucGCGGCCGCUgagcguggAG-ACCGUGa -3'
miRNA:   3'- gCGAUUCU-------UGCCGGCGG--------UCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 28101 0.7 0.486534
Target:  5'- cCGCUGguAGGACuacuGCCGCCGuUGCCGCc -3'
miRNA:   3'- -GCGAU--UCUUGc---CGGCGGUcAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 32227 0.7 0.50654
Target:  5'- uCGUUGGcGugGGCCGCCgcGGUgACCGCu -3'
miRNA:   3'- -GCGAUUcUugCCGGCGG--UCA-UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 74878 0.7 0.526888
Target:  5'- gGCUAucgAGAccgugACGGCCGCUGGcuacACCGUGa -3'
miRNA:   3'- gCGAU---UCU-----UGCCGGCGGUCa---UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 63015 0.7 0.537178
Target:  5'- gCGCUGugagccauuGAGCGGCUGgcauuCCAgGUACCGCa -3'
miRNA:   3'- -GCGAUu--------CUUGCCGGC-----GGU-CAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 17699 0.69 0.557955
Target:  5'- aCGCcuc-GACGGuUCGCCAGUcgacgGCCGCGg -3'
miRNA:   3'- -GCGauucUUGCC-GGCGGUCA-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 62181 0.69 0.557955
Target:  5'- cCGCccauGGA-GGCCGCCA-UGCCGCGc -3'
miRNA:   3'- -GCGauu-CUUgCCGGCGGUcAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 66926 0.69 0.568431
Target:  5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3'
miRNA:   3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 17761 0.69 0.577901
Target:  5'- cCGgUGAGAGCGGgaucgaaCCGCCAGcggGCCGg- -3'
miRNA:   3'- -GCgAUUCUUGCC-------GGCGGUCa--UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 18383 0.69 0.578955
Target:  5'- aGUcGAGGACuGCgGCC-GUGCCGCGc -3'
miRNA:   3'- gCGaUUCUUGcCGgCGGuCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 40379 0.69 0.578955
Target:  5'- aGC-AAGAGCGGCacCGCCAGcgugGCCGg- -3'
miRNA:   3'- gCGaUUCUUGCCG--GCGGUCa---UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 51834 0.69 0.58952
Target:  5'- cCGCgccGGGGCGGCCGCCGacgACCa-- -3'
miRNA:   3'- -GCGau-UCUUGCCGGCGGUca-UGGcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.