Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18404 | 3' | -56.4 | NC_004681.1 | + | 62519 | 0.69 | 0.593756 |
Target: 5'- gCGgaGAGGGCGGUgucggcgcccagccaUGCCAGUACC-CGg -3' miRNA: 3'- -GCgaUUCUUGCCG---------------GCGGUCAUGGcGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 4158 | 0.68 | 0.600119 |
Target: 5'- uCGCUGAGAugGcguuCCGCCAGUucaagcugaACCaGUGg -3' miRNA: 3'- -GCGAUUCUugCc---GGCGGUCA---------UGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 33364 | 0.68 | 0.608617 |
Target: 5'- gGCUGAGAcCGGCCGCgucgcgcgcGCCGUGu -3' miRNA: 3'- gCGAUUCUuGCCGGCGguca-----UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 24961 | 0.68 | 0.610743 |
Target: 5'- uGCUGGuGAgggagccuugGCGGCCGCCGc--CCGCGc -3' miRNA: 3'- gCGAUU-CU----------UGCCGGCGGUcauGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 47088 | 0.68 | 0.653328 |
Target: 5'- cCGCgaacccAAGGACGaGCCGCC---GCCGCu -3' miRNA: 3'- -GCGa-----UUCUUGC-CGGCGGucaUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 37648 | 0.67 | 0.663951 |
Target: 5'- gCGCUccGAcuucuGCGGggccUCGCCAGcgGCCGCGc -3' miRNA: 3'- -GCGAuuCU-----UGCC----GGCGGUCa-UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 28012 | 0.67 | 0.674547 |
Target: 5'- cCGCcGAGGccccGCGuGCCGCUacuggacgaguuGGUGCCGCc -3' miRNA: 3'- -GCGaUUCU----UGC-CGGCGG------------UCAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 61733 | 0.67 | 0.684051 |
Target: 5'- cCGC-AAGGA-GGCCGCCcucgcgcgccaccAG-ACCGCGg -3' miRNA: 3'- -GCGaUUCUUgCCGGCGG-------------UCaUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 64228 | 0.67 | 0.689316 |
Target: 5'- gGC-GAGGAUGGCCGCUGGcaugaaauccccgaACCGCa -3' miRNA: 3'- gCGaUUCUUGCCGGCGGUCa-------------UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 30849 | 0.67 | 0.695616 |
Target: 5'- uCGUgGAGGACGGCaCGCCGc--CCGCc -3' miRNA: 3'- -GCGaUUCUUGCCG-GCGGUcauGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 16772 | 0.67 | 0.695616 |
Target: 5'- uGCUcGGAGCGccGUCGCCAGcACCaGUGa -3' miRNA: 3'- gCGAuUCUUGC--CGGCGGUCaUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 31999 | 0.67 | 0.695616 |
Target: 5'- cCGCgau-GGCGGCCGCCgcgagguaguAGUACUgGCGa -3' miRNA: 3'- -GCGauucUUGCCGGCGG----------UCAUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 25167 | 0.67 | 0.695616 |
Target: 5'- gGCUGAGcGAgGuGCCGCCcGcGCCGCc -3' miRNA: 3'- gCGAUUC-UUgC-CGGCGGuCaUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 12243 | 0.67 | 0.706069 |
Target: 5'- gGCUGAGucgGGUgGcCCGGUGCUGUGg -3' miRNA: 3'- gCGAUUCuugCCGgC-GGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 2132 | 0.67 | 0.709192 |
Target: 5'- cCGCggu--GCGGCCGCCcuccacgaccaccugGCCGCGg -3' miRNA: 3'- -GCGauucuUGCCGGCGGuca------------UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 39581 | 0.66 | 0.726761 |
Target: 5'- uCGCUGccacCGGCCuugaGCCAGcgcACCGCGg -3' miRNA: 3'- -GCGAUucuuGCCGG----CGGUCa--UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 18730 | 0.66 | 0.726761 |
Target: 5'- uCGCcAAGGgcgACGGCgGCgAG-GCCGCGc -3' miRNA: 3'- -GCGaUUCU---UGCCGgCGgUCaUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 10762 | 0.66 | 0.726761 |
Target: 5'- aCGC----GACGGCCGCgGGcACCGgGg -3' miRNA: 3'- -GCGauucUUGCCGGCGgUCaUGGCgC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 49466 | 0.66 | 0.73698 |
Target: 5'- cCGCUAcaAGGACGGCaagcccuacUGcCCAGUcGCCGgGg -3' miRNA: 3'- -GCGAU--UCUUGCCG---------GC-GGUCA-UGGCgC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 16030 | 0.66 | 0.73698 |
Target: 5'- uGCUGgcaAGGGC-GCCGCCGcuGUcACCGCa -3' miRNA: 3'- gCGAU---UCUUGcCGGCGGU--CA-UGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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