miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18404 3' -56.4 NC_004681.1 + 64228 0.67 0.689316
Target:  5'- gGC-GAGGAUGGCCGCUGGcaugaaauccccgaACCGCa -3'
miRNA:   3'- gCGaUUCUUGCCGGCGGUCa-------------UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 61733 0.67 0.684051
Target:  5'- cCGC-AAGGA-GGCCGCCcucgcgcgccaccAG-ACCGCGg -3'
miRNA:   3'- -GCGaUUCUUgCCGGCGG-------------UCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 28012 0.67 0.674547
Target:  5'- cCGCcGAGGccccGCGuGCCGCUacuggacgaguuGGUGCCGCc -3'
miRNA:   3'- -GCGaUUCU----UGC-CGGCGG------------UCAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 37648 0.67 0.663951
Target:  5'- gCGCUccGAcuucuGCGGggccUCGCCAGcgGCCGCGc -3'
miRNA:   3'- -GCGAuuCU-----UGCC----GGCGGUCa-UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 47088 0.68 0.653328
Target:  5'- cCGCgaacccAAGGACGaGCCGCC---GCCGCu -3'
miRNA:   3'- -GCGa-----UUCUUGC-CGGCGGucaUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 24961 0.68 0.610743
Target:  5'- uGCUGGuGAgggagccuugGCGGCCGCCGc--CCGCGc -3'
miRNA:   3'- gCGAUU-CU----------UGCCGGCGGUcauGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 33364 0.68 0.608617
Target:  5'- gGCUGAGAcCGGCCGCgucgcgcgcGCCGUGu -3'
miRNA:   3'- gCGAUUCUuGCCGGCGguca-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 4158 0.68 0.600119
Target:  5'- uCGCUGAGAugGcguuCCGCCAGUucaagcugaACCaGUGg -3'
miRNA:   3'- -GCGAUUCUugCc---GGCGGUCA---------UGG-CGC- -5'
18404 3' -56.4 NC_004681.1 + 62519 0.69 0.593756
Target:  5'- gCGgaGAGGGCGGUgucggcgcccagccaUGCCAGUACC-CGg -3'
miRNA:   3'- -GCgaUUCUUGCCG---------------GCGGUCAUGGcGC- -5'
18404 3' -56.4 NC_004681.1 + 51834 0.69 0.58952
Target:  5'- cCGCgccGGGGCGGCCGCCGacgACCa-- -3'
miRNA:   3'- -GCGau-UCUUGCCGGCGGUca-UGGcgc -5'
18404 3' -56.4 NC_004681.1 + 40379 0.69 0.578955
Target:  5'- aGC-AAGAGCGGCacCGCCAGcgugGCCGg- -3'
miRNA:   3'- gCGaUUCUUGCCG--GCGGUCa---UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 18383 0.69 0.578955
Target:  5'- aGUcGAGGACuGCgGCC-GUGCCGCGc -3'
miRNA:   3'- gCGaUUCUUGcCGgCGGuCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 17761 0.69 0.577901
Target:  5'- cCGgUGAGAGCGGgaucgaaCCGCCAGcggGCCGg- -3'
miRNA:   3'- -GCgAUUCUUGCC-------GGCGGUCa--UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 66926 0.69 0.568431
Target:  5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3'
miRNA:   3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 62181 0.69 0.557955
Target:  5'- cCGCccauGGA-GGCCGCCA-UGCCGCGc -3'
miRNA:   3'- -GCGauu-CUUgCCGGCGGUcAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 17699 0.69 0.557955
Target:  5'- aCGCcuc-GACGGuUCGCCAGUcgacgGCCGCGg -3'
miRNA:   3'- -GCGauucUUGCC-GGCGGUCA-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 63015 0.7 0.537178
Target:  5'- gCGCUGugagccauuGAGCGGCUGgcauuCCAgGUACCGCa -3'
miRNA:   3'- -GCGAUu--------CUUGCCGGC-----GGU-CAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 74878 0.7 0.526888
Target:  5'- gGCUAucgAGAccgugACGGCCGCUGGcuacACCGUGa -3'
miRNA:   3'- gCGAU---UCU-----UGCCGGCGGUCa---UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 32227 0.7 0.50654
Target:  5'- uCGUUGGcGugGGCCGCCgcGGUgACCGCu -3'
miRNA:   3'- -GCGAUUcUugCCGGCGG--UCA-UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 28101 0.7 0.486534
Target:  5'- cCGCUGguAGGACuacuGCCGCCGuUGCCGCc -3'
miRNA:   3'- -GCGAU--UCUUGc---CGGCGGUcAUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.