Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 70948 | 0.71 | 0.46594 |
|
Target: 5'- gGCUGAGGcaugcucGCGGCCGCUgagcguggAG-ACCGUGa -3' miRNA: 3'- gCGAUUCU-------UGCCGGCGG--------UCaUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 5787 | 0.72 | 0.418825 |
|
Target: 5'- gGCgauguggAAGAACgcuGGCCGCCccaaccuGGUACUGCGg -3' miRNA: 3'- gCGa------UUCUUG---CCGGCGG-------UCAUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 58650 | 0.72 | 0.410655 |
|
Target: 5'- uGCgcc--ACGGCCGCCuGcGCCGCGg -3' miRNA: 3'- gCGauucuUGCCGGCGGuCaUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 2034 | 0.72 | 0.410655 |
|
Target: 5'- uCGUgGAGGGCGGCCGC----ACCGCGg -3' miRNA: 3'- -GCGaUUCUUGCCGGCGgucaUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 30246 | 0.72 | 0.401694 |
|
Target: 5'- cCGCcacAGcGGCGGCgGCCGGUACgGCGu -3' miRNA: 3'- -GCGau-UC-UUGCCGgCGGUCAUGgCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 73276 | 0.74 | 0.319222 |
|
Target: 5'- uGCcGGGAggugcGCGGCUggaguGCCAGUACUGCGg -3' miRNA: 3'- gCGaUUCU-----UGCCGG-----CGGUCAUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 65118 | 0.76 | 0.24394 |
|
Target: 5'- gCGCccugAAGuACGGCCGCCAcaacUACCGCGu -3' miRNA: 3'- -GCGa---UUCuUGCCGGCGGUc---AUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 16245 | 0.86 | 0.053757 |
|
Target: 5'- aGCgacGGGAUGGCCGCCAGcGCCGCGa -3' miRNA: 3'- gCGau-UCUUGCCGGCGGUCaUGGCGC- -5' |
|||||||
| 18404 | 3' | -56.4 | NC_004681.1 | + | 19796 | 1.09 | 0.001318 |
|
Target: 5'- cCGCUAAGAACGGCCGCCAGUACCGCGu -3' miRNA: 3'- -GCGAUUCUUGCCGGCGGUCAUGGCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home