miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18404 3' -56.4 NC_004681.1 + 74878 0.7 0.526888
Target:  5'- gGCUAucgAGAccgugACGGCCGCUGGcuacACCGUGa -3'
miRNA:   3'- gCGAU---UCU-----UGCCGGCGGUCa---UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 73276 0.74 0.319222
Target:  5'- uGCcGGGAggugcGCGGCUggaguGCCAGUACUGCGg -3'
miRNA:   3'- gCGaUUCU-----UGCCGG-----CGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 70948 0.71 0.46594
Target:  5'- gGCUGAGGcaugcucGCGGCCGCUgagcguggAG-ACCGUGa -3'
miRNA:   3'- gCGAUUCU-------UGCCGGCGG--------UCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 66926 0.69 0.568431
Target:  5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3'
miRNA:   3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 65118 0.76 0.24394
Target:  5'- gCGCccugAAGuACGGCCGCCAcaacUACCGCGu -3'
miRNA:   3'- -GCGa---UUCuUGCCGGCGGUc---AUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 64228 0.67 0.689316
Target:  5'- gGC-GAGGAUGGCCGCUGGcaugaaauccccgaACCGCa -3'
miRNA:   3'- gCGaUUCUUGCCGGCGGUCa-------------UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 63015 0.7 0.537178
Target:  5'- gCGCUGugagccauuGAGCGGCUGgcauuCCAgGUACCGCa -3'
miRNA:   3'- -GCGAUu--------CUUGCCGGC-----GGU-CAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 62519 0.69 0.593756
Target:  5'- gCGgaGAGGGCGGUgucggcgcccagccaUGCCAGUACC-CGg -3'
miRNA:   3'- -GCgaUUCUUGCCG---------------GCGGUCAUGGcGC- -5'
18404 3' -56.4 NC_004681.1 + 62181 0.69 0.557955
Target:  5'- cCGCccauGGA-GGCCGCCA-UGCCGCGc -3'
miRNA:   3'- -GCGauu-CUUgCCGGCGGUcAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 61733 0.67 0.684051
Target:  5'- cCGC-AAGGA-GGCCGCCcucgcgcgccaccAG-ACCGCGg -3'
miRNA:   3'- -GCGaUUCUUgCCGGCGG-------------UCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 59298 0.66 0.767002
Target:  5'- aGCU--GGACGaGCCGcCCGGgagGCCGUc -3'
miRNA:   3'- gCGAuuCUUGC-CGGC-GGUCa--UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 58650 0.72 0.410655
Target:  5'- uGCgcc--ACGGCCGCCuGcGCCGCGg -3'
miRNA:   3'- gCGauucuUGCCGGCGGuCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 53092 0.66 0.767002
Target:  5'- aCGUUGGGAGCGaauguggaguaGCCGUCAaacuUGCCGCc -3'
miRNA:   3'- -GCGAUUCUUGC-----------CGGCGGUc---AUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 51834 0.69 0.58952
Target:  5'- cCGCgccGGGGCGGCCGCCGacgACCa-- -3'
miRNA:   3'- -GCGau-UCUUGCCGGCGGUca-UGGcgc -5'
18404 3' -56.4 NC_004681.1 + 49466 0.66 0.73698
Target:  5'- cCGCUAcaAGGACGGCaagcccuacUGcCCAGUcGCCGgGg -3'
miRNA:   3'- -GCGAU--UCUUGCCG---------GC-GGUCA-UGGCgC- -5'
18404 3' -56.4 NC_004681.1 + 48777 0.66 0.767002
Target:  5'- gGCccaUGGGAGCuGGcCCGCCAGgguucCCGCc -3'
miRNA:   3'- gCG---AUUCUUG-CC-GGCGGUCau---GGCGc -5'
18404 3' -56.4 NC_004681.1 + 47088 0.68 0.653328
Target:  5'- cCGCgaacccAAGGACGaGCCGCC---GCCGCu -3'
miRNA:   3'- -GCGa-----UUCUUGC-CGGCGGucaUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 46396 0.66 0.767002
Target:  5'- uGC--AGGAUGGCUGCCc--GCCGUGg -3'
miRNA:   3'- gCGauUCUUGCCGGCGGucaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 40379 0.69 0.578955
Target:  5'- aGC-AAGAGCGGCacCGCCAGcgugGCCGg- -3'
miRNA:   3'- gCGaUUCUUGCCG--GCGGUCa---UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 39581 0.66 0.726761
Target:  5'- uCGCUGccacCGGCCuugaGCCAGcgcACCGCGg -3'
miRNA:   3'- -GCGAUucuuGCCGG----CGGUCa--UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.