miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18404 3' -56.4 NC_004681.1 + 37648 0.67 0.663951
Target:  5'- gCGCUccGAcuucuGCGGggccUCGCCAGcgGCCGCGc -3'
miRNA:   3'- -GCGAuuCU-----UGCC----GGCGGUCa-UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 33364 0.68 0.608617
Target:  5'- gGCUGAGAcCGGCCGCgucgcgcgcGCCGUGu -3'
miRNA:   3'- gCGAUUCUuGCCGGCGguca-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 32227 0.7 0.50654
Target:  5'- uCGUUGGcGugGGCCGCCgcGGUgACCGCu -3'
miRNA:   3'- -GCGAUUcUugCCGGCGG--UCA-UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 31999 0.67 0.695616
Target:  5'- cCGCgau-GGCGGCCGCCgcgagguaguAGUACUgGCGa -3'
miRNA:   3'- -GCGauucUUGCCGGCGG----------UCAUGG-CGC- -5'
18404 3' -56.4 NC_004681.1 + 30849 0.67 0.695616
Target:  5'- uCGUgGAGGACGGCaCGCCGc--CCGCc -3'
miRNA:   3'- -GCGaUUCUUGCCG-GCGGUcauGGCGc -5'
18404 3' -56.4 NC_004681.1 + 30246 0.72 0.401694
Target:  5'- cCGCcacAGcGGCGGCgGCCGGUACgGCGu -3'
miRNA:   3'- -GCGau-UC-UUGCCGgCGGUCAUGgCGC- -5'
18404 3' -56.4 NC_004681.1 + 28101 0.7 0.486534
Target:  5'- cCGCUGguAGGACuacuGCCGCCGuUGCCGCc -3'
miRNA:   3'- -GCGAU--UCUUGc---CGGCGGUcAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 28012 0.67 0.674547
Target:  5'- cCGCcGAGGccccGCGuGCCGCUacuggacgaguuGGUGCCGCc -3'
miRNA:   3'- -GCGaUUCU----UGC-CGGCGG------------UCAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 25167 0.67 0.695616
Target:  5'- gGCUGAGcGAgGuGCCGCCcGcGCCGCc -3'
miRNA:   3'- gCGAUUC-UUgC-CGGCGGuCaUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 24961 0.68 0.610743
Target:  5'- uGCUGGuGAgggagccuugGCGGCCGCCGc--CCGCGc -3'
miRNA:   3'- gCGAUU-CU----------UGCCGGCGGUcauGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 19796 1.09 0.001318
Target:  5'- cCGCUAAGAACGGCCGCCAGUACCGCGu -3'
miRNA:   3'- -GCGAUUCUUGCCGGCGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 19662 0.66 0.767002
Target:  5'- uGCgGGGAACGGgaagCGCUGGaUGCCGCu -3'
miRNA:   3'- gCGaUUCUUGCCg---GCGGUC-AUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 18730 0.66 0.726761
Target:  5'- uCGCcAAGGgcgACGGCgGCgAG-GCCGCGc -3'
miRNA:   3'- -GCGaUUCU---UGCCGgCGgUCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 18383 0.69 0.578955
Target:  5'- aGUcGAGGACuGCgGCC-GUGCCGCGc -3'
miRNA:   3'- gCGaUUCUUGcCGgCGGuCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 17761 0.69 0.577901
Target:  5'- cCGgUGAGAGCGGgaucgaaCCGCCAGcggGCCGg- -3'
miRNA:   3'- -GCgAUUCUUGCC-------GGCGGUCa--UGGCgc -5'
18404 3' -56.4 NC_004681.1 + 17699 0.69 0.557955
Target:  5'- aCGCcuc-GACGGuUCGCCAGUcgacgGCCGCGg -3'
miRNA:   3'- -GCGauucUUGCC-GGCGGUCA-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 16772 0.67 0.695616
Target:  5'- uGCUcGGAGCGccGUCGCCAGcACCaGUGa -3'
miRNA:   3'- gCGAuUCUUGC--CGGCGGUCaUGG-CGC- -5'
18404 3' -56.4 NC_004681.1 + 16245 0.86 0.053757
Target:  5'- aGCgacGGGAUGGCCGCCAGcGCCGCGa -3'
miRNA:   3'- gCGau-UCUUGCCGGCGGUCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 16030 0.66 0.73698
Target:  5'- uGCUGgcaAGGGC-GCCGCCGcuGUcACCGCa -3'
miRNA:   3'- gCGAU---UCUUGcCGGCGGU--CA-UGGCGc -5'
18404 3' -56.4 NC_004681.1 + 12243 0.67 0.706069
Target:  5'- gGCUGAGucgGGUgGcCCGGUGCUGUGg -3'
miRNA:   3'- gCGAUUCuugCCGgC-GGUCAUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.