Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18404 | 3' | -56.4 | NC_004681.1 | + | 63015 | 0.7 | 0.537178 |
Target: 5'- gCGCUGugagccauuGAGCGGCUGgcauuCCAgGUACCGCa -3' miRNA: 3'- -GCGAUu--------CUUGCCGGC-----GGU-CAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 17699 | 0.69 | 0.557955 |
Target: 5'- aCGCcuc-GACGGuUCGCCAGUcgacgGCCGCGg -3' miRNA: 3'- -GCGauucUUGCC-GGCGGUCA-----UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 66926 | 0.69 | 0.568431 |
Target: 5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3' miRNA: 3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 40379 | 0.69 | 0.578955 |
Target: 5'- aGC-AAGAGCGGCacCGCCAGcgugGCCGg- -3' miRNA: 3'- gCGaUUCUUGCCG--GCGGUCa---UGGCgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 62519 | 0.69 | 0.593756 |
Target: 5'- gCGgaGAGGGCGGUgucggcgcccagccaUGCCAGUACC-CGg -3' miRNA: 3'- -GCgaUUCUUGCCG---------------GCGGUCAUGGcGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 24961 | 0.68 | 0.610743 |
Target: 5'- uGCUGGuGAgggagccuugGCGGCCGCCGc--CCGCGc -3' miRNA: 3'- gCGAUU-CU----------UGCCGGCGGUcauGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 28012 | 0.67 | 0.674547 |
Target: 5'- cCGCcGAGGccccGCGuGCCGCUacuggacgaguuGGUGCCGCc -3' miRNA: 3'- -GCGaUUCU----UGC-CGGCGG------------UCAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 25167 | 0.67 | 0.695616 |
Target: 5'- gGCUGAGcGAgGuGCCGCCcGcGCCGCc -3' miRNA: 3'- gCGAUUC-UUgC-CGGCGGuCaUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 31999 | 0.67 | 0.695616 |
Target: 5'- cCGCgau-GGCGGCCGCCgcgagguaguAGUACUgGCGa -3' miRNA: 3'- -GCGauucUUGCCGGCGG----------UCAUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 16772 | 0.67 | 0.695616 |
Target: 5'- uGCUcGGAGCGccGUCGCCAGcACCaGUGa -3' miRNA: 3'- gCGAuUCUUGC--CGGCGGUCaUGG-CGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 2132 | 0.67 | 0.709192 |
Target: 5'- cCGCggu--GCGGCCGCCcuccacgaccaccugGCCGCGg -3' miRNA: 3'- -GCGauucuUGCCGGCGGuca------------UGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 51834 | 0.69 | 0.58952 |
Target: 5'- cCGCgccGGGGCGGCCGCCGacgACCa-- -3' miRNA: 3'- -GCGau-UCUUGCCGGCGGUca-UGGcgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 18383 | 0.69 | 0.578955 |
Target: 5'- aGUcGAGGACuGCgGCC-GUGCCGCGc -3' miRNA: 3'- gCGaUUCUUGcCGgCGGuCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 17761 | 0.69 | 0.577901 |
Target: 5'- cCGgUGAGAGCGGgaucgaaCCGCCAGcggGCCGg- -3' miRNA: 3'- -GCgAUUCUUGCC-------GGCGGUCa--UGGCgc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 62181 | 0.69 | 0.557955 |
Target: 5'- cCGCccauGGA-GGCCGCCA-UGCCGCGc -3' miRNA: 3'- -GCGauu-CUUgCCGGCGGUcAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 32227 | 0.7 | 0.50654 |
Target: 5'- uCGUUGGcGugGGCCGCCgcGGUgACCGCu -3' miRNA: 3'- -GCGAUUcUugCCGGCGG--UCA-UGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 28101 | 0.7 | 0.486534 |
Target: 5'- cCGCUGguAGGACuacuGCCGCCGuUGCCGCc -3' miRNA: 3'- -GCGAU--UCUUGc---CGGCGGUcAUGGCGc -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 70948 | 0.71 | 0.46594 |
Target: 5'- gGCUGAGGcaugcucGCGGCCGCUgagcguggAG-ACCGUGa -3' miRNA: 3'- gCGAUUCU-------UGCCGGCGG--------UCaUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 73276 | 0.74 | 0.319222 |
Target: 5'- uGCcGGGAggugcGCGGCUggaguGCCAGUACUGCGg -3' miRNA: 3'- gCGaUUCU-----UGCCGG-----CGGUCAUGGCGC- -5' |
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18404 | 3' | -56.4 | NC_004681.1 | + | 19662 | 0.66 | 0.767002 |
Target: 5'- uGCgGGGAACGGgaagCGCUGGaUGCCGCu -3' miRNA: 3'- gCGaUUCUUGCCg---GCGGUC-AUGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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