miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18404 3' -56.4 NC_004681.1 + 28012 0.67 0.674547
Target:  5'- cCGCcGAGGccccGCGuGCCGCUacuggacgaguuGGUGCCGCc -3'
miRNA:   3'- -GCGaUUCU----UGC-CGGCGG------------UCAUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 53092 0.66 0.767002
Target:  5'- aCGUUGGGAGCGaauguggaguaGCCGUCAaacuUGCCGCc -3'
miRNA:   3'- -GCGAUUCUUGC-----------CGGCGGUc---AUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 48777 0.66 0.767002
Target:  5'- gGCccaUGGGAGCuGGcCCGCCAGgguucCCGCc -3'
miRNA:   3'- gCG---AUUCUUG-CC-GGCGGUCau---GGCGc -5'
18404 3' -56.4 NC_004681.1 + 10762 0.66 0.726761
Target:  5'- aCGC----GACGGCCGCgGGcACCGgGg -3'
miRNA:   3'- -GCGauucUUGCCGGCGgUCaUGGCgC- -5'
18404 3' -56.4 NC_004681.1 + 46396 0.66 0.767002
Target:  5'- uGC--AGGAUGGCUGCCc--GCCGUGg -3'
miRNA:   3'- gCGauUCUUGCCGGCGGucaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 37648 0.67 0.663951
Target:  5'- gCGCUccGAcuucuGCGGggccUCGCCAGcgGCCGCGc -3'
miRNA:   3'- -GCGAuuCU-----UGCC----GGCGGUCa-UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 12243 0.67 0.706069
Target:  5'- gGCUGAGucgGGUgGcCCGGUGCUGUGg -3'
miRNA:   3'- gCGAUUCuugCCGgC-GGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 30246 0.72 0.401694
Target:  5'- cCGCcacAGcGGCGGCgGCCGGUACgGCGu -3'
miRNA:   3'- -GCGau-UC-UUGCCGgCGGUCAUGgCGC- -5'
18404 3' -56.4 NC_004681.1 + 18730 0.66 0.726761
Target:  5'- uCGCcAAGGgcgACGGCgGCgAG-GCCGCGc -3'
miRNA:   3'- -GCGaUUCU---UGCCGgCGgUCaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 2034 0.72 0.410655
Target:  5'- uCGUgGAGGGCGGCCGC----ACCGCGg -3'
miRNA:   3'- -GCGaUUCUUGCCGGCGgucaUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 5787 0.72 0.418825
Target:  5'- gGCgauguggAAGAACgcuGGCCGCCccaaccuGGUACUGCGg -3'
miRNA:   3'- gCGa------UUCUUG---CCGGCGG-------UCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 74878 0.7 0.526888
Target:  5'- gGCUAucgAGAccgugACGGCCGCUGGcuacACCGUGa -3'
miRNA:   3'- gCGAU---UCU-----UGCCGGCGGUCa---UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 49466 0.66 0.73698
Target:  5'- cCGCUAcaAGGACGGCaagcccuacUGcCCAGUcGCCGgGg -3'
miRNA:   3'- -GCGAU--UCUUGCCG---------GC-GGUCA-UGGCgC- -5'
18404 3' -56.4 NC_004681.1 + 7187 0.66 0.744075
Target:  5'- uCGCgcacGAGAagguacucgagaagGCGGCCgguGCCGGUaacggcgacACCGCGc -3'
miRNA:   3'- -GCGa---UUCU--------------UGCCGG---CGGUCA---------UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 66926 0.69 0.568431
Target:  5'- uCGUUGAcucuguGGCGGCC-CUGGUGCCGCGc -3'
miRNA:   3'- -GCGAUUc-----UUGCCGGcGGUCAUGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 7569 0.66 0.757111
Target:  5'- gGUgGAGGACGGCCG--GGgagGCCGUGa -3'
miRNA:   3'- gCGaUUCUUGCCGGCggUCa--UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 4158 0.68 0.600119
Target:  5'- uCGCUGAGAugGcguuCCGCCAGUucaagcugaACCaGUGg -3'
miRNA:   3'- -GCGAUUCUugCc---GGCGGUCA---------UGG-CGC- -5'
18404 3' -56.4 NC_004681.1 + 33364 0.68 0.608617
Target:  5'- gGCUGAGAcCGGCCGCgucgcgcgcGCCGUGu -3'
miRNA:   3'- gCGAUUCUuGCCGGCGguca-----UGGCGC- -5'
18404 3' -56.4 NC_004681.1 + 47088 0.68 0.653328
Target:  5'- cCGCgaacccAAGGACGaGCCGCC---GCCGCu -3'
miRNA:   3'- -GCGa-----UUCUUGC-CGGCGGucaUGGCGc -5'
18404 3' -56.4 NC_004681.1 + 16030 0.66 0.73698
Target:  5'- uGCUGgcaAGGGC-GCCGCCGcuGUcACCGCa -3'
miRNA:   3'- gCGAU---UCUUGcCGGCGGU--CA-UGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.