Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18404 | 5' | -58.5 | NC_004681.1 | + | 61903 | 0.66 | 0.630938 |
Target: 5'- aGCUCCaGCUUCuGGGUGCgcUCCUGa -3' miRNA: 3'- -UGGGGcCGAAGcUCCACGacAGGAUg -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 7273 | 0.66 | 0.599136 |
Target: 5'- cACCUCGGCgcCGA-GUGCgccgCCUGCg -3' miRNA: 3'- -UGGGGCCGaaGCUcCACGaca-GGAUG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 25250 | 0.66 | 0.588578 |
Target: 5'- cGCCCgCGGCggCGguuGGGUGCgcUUCUACa -3' miRNA: 3'- -UGGG-GCCGaaGC---UCCACGacAGGAUG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 47265 | 0.67 | 0.578053 |
Target: 5'- cACCuuGGCgUCGAGGuUGUUcUCCUcGCa -3' miRNA: 3'- -UGGggCCGaAGCUCC-ACGAcAGGA-UG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 2742 | 0.68 | 0.485999 |
Target: 5'- gACCCgGGCUa--GGGUGCcGUCCgcgGCg -3' miRNA: 3'- -UGGGgCCGAagcUCCACGaCAGGa--UG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 7173 | 0.68 | 0.466455 |
Target: 5'- uUCCCGGUgg-GGGGUGCcGUCCUuCa -3' miRNA: 3'- uGGGGCCGaagCUCCACGaCAGGAuG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 8602 | 0.69 | 0.437925 |
Target: 5'- uCCCgGGCaUCGuGGagcaGCUGUUCUACg -3' miRNA: 3'- uGGGgCCGaAGCuCCa---CGACAGGAUG- -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 50238 | 0.71 | 0.350608 |
Target: 5'- cGCCCuCGGCUuguggaUCaAGGcGCUGUCCUGg -3' miRNA: 3'- -UGGG-GCCGA------AGcUCCaCGACAGGAUg -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 52882 | 0.82 | 0.065842 |
Target: 5'- uCCCCGGCgacgaacacCGAGGUGCUGUCCg-- -3' miRNA: 3'- uGGGGCCGaa-------GCUCCACGACAGGaug -5' |
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18404 | 5' | -58.5 | NC_004681.1 | + | 19834 | 1.09 | 0.000617 |
Target: 5'- gACCCCGGCUUCGAGGUGCUGUCCUACa -3' miRNA: 3'- -UGGGGCCGAAGCUCCACGACAGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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