miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18405 3' -60.7 NC_004681.1 + 53547 0.66 0.515953
Target:  5'- uGCCGaGGGCUUcgaucagaccGUUCGugAUGCGGGUc -3'
miRNA:   3'- -UGGCgCCCGGA----------CGAGUugUGCGUCCA- -5'
18405 3' -60.7 NC_004681.1 + 44763 0.66 0.515953
Target:  5'- cUCGCGGGCg-GCuUCAACuCGUGGGa -3'
miRNA:   3'- uGGCGCCCGgaCG-AGUUGuGCGUCCa -5'
18405 3' -60.7 NC_004681.1 + 46531 0.66 0.515953
Target:  5'- gGCCGCGGGaaCCUGCgCggUugGguGa- -3'
miRNA:   3'- -UGGCGCCC--GGACGaGuuGugCguCca -5'
18405 3' -60.7 NC_004681.1 + 22630 0.66 0.496074
Target:  5'- cACCGCGGGCa-GCgCcGCGCGCAa-- -3'
miRNA:   3'- -UGGCGCCCGgaCGaGuUGUGCGUcca -5'
18405 3' -60.7 NC_004681.1 + 36871 0.66 0.496074
Target:  5'- --gGCGGGCCaGCggccuggcaGACGCGCuGGUa -3'
miRNA:   3'- uggCGCCCGGaCGag-------UUGUGCGuCCA- -5'
18405 3' -60.7 NC_004681.1 + 50385 0.66 0.496074
Target:  5'- gGCCGCGGGgacguggcccuuCUUGCgguGgGCGCGGGa -3'
miRNA:   3'- -UGGCGCCC------------GGACGaguUgUGCGUCCa -5'
18405 3' -60.7 NC_004681.1 + 1441 0.66 0.496074
Target:  5'- cGCCGCGGGCggGgUCAucaagucccccuACugGCAGa- -3'
miRNA:   3'- -UGGCGCCCGgaCgAGU------------UGugCGUCca -5'
18405 3' -60.7 NC_004681.1 + 56405 0.66 0.486265
Target:  5'- cGCCGUGGGUgUGCUUGAC-CgGCAGc- -3'
miRNA:   3'- -UGGCGCCCGgACGAGUUGuG-CGUCca -5'
18405 3' -60.7 NC_004681.1 + 28682 0.66 0.486265
Target:  5'- cCCGCGGGCgCUGaCguguuCGCGCuGGUc -3'
miRNA:   3'- uGGCGCCCG-GAC-Gaguu-GUGCGuCCA- -5'
18405 3' -60.7 NC_004681.1 + 2448 0.66 0.476549
Target:  5'- uGCC-UGGGCCUuguugGCgcgCGGCACGCAGa- -3'
miRNA:   3'- -UGGcGCCCGGA-----CGa--GUUGUGCGUCca -5'
18405 3' -60.7 NC_004681.1 + 48871 0.66 0.476549
Target:  5'- uGCUGaCGGGCCucucgcgccUGuCUCAcguCACGCGGGc -3'
miRNA:   3'- -UGGC-GCCCGG---------AC-GAGUu--GUGCGUCCa -5'
18405 3' -60.7 NC_004681.1 + 49656 0.66 0.476549
Target:  5'- uGCCuCGGGCCUGCc---CGCGgGGGa -3'
miRNA:   3'- -UGGcGCCCGGACGaguuGUGCgUCCa -5'
18405 3' -60.7 NC_004681.1 + 9610 0.66 0.46693
Target:  5'- cACCaGCaGGCCgagGCgcucuUCGGCGCGCAcGGUg -3'
miRNA:   3'- -UGG-CGcCCGGa--CG-----AGUUGUGCGU-CCA- -5'
18405 3' -60.7 NC_004681.1 + 39410 0.66 0.46693
Target:  5'- -gCGCGGcGCC-GC---GCGCGCAGGUa -3'
miRNA:   3'- ugGCGCC-CGGaCGaguUGUGCGUCCA- -5'
18405 3' -60.7 NC_004681.1 + 17740 0.66 0.46693
Target:  5'- cGCCaGCGGGCCgGUaguagugCGACgugaACGCGGGg -3'
miRNA:   3'- -UGG-CGCCCGGaCGa------GUUG----UGCGUCCa -5'
18405 3' -60.7 NC_004681.1 + 23934 0.67 0.457413
Target:  5'- cGCUGCGcggcgccggaucGGCgUGCUCAACACGUucgccgaccuGGUa -3'
miRNA:   3'- -UGGCGC------------CCGgACGAGUUGUGCGu---------CCA- -5'
18405 3' -60.7 NC_004681.1 + 62949 0.67 0.438696
Target:  5'- gUCGCGGuCCUuCUCGGCGCGCucGGUg -3'
miRNA:   3'- uGGCGCCcGGAcGAGUUGUGCGu-CCA- -5'
18405 3' -60.7 NC_004681.1 + 3404 0.67 0.420424
Target:  5'- gGCCGCGGcGCCcGCgCGagccacGCGCGCAcGGa -3'
miRNA:   3'- -UGGCGCC-CGGaCGaGU------UGUGCGU-CCa -5'
18405 3' -60.7 NC_004681.1 + 7461 0.67 0.415033
Target:  5'- gGCCGCGGGCUUGgCgggaggcuucgccgCGGCG-GCGGGg -3'
miRNA:   3'- -UGGCGCCCGGAC-Ga-------------GUUGUgCGUCCa -5'
18405 3' -60.7 NC_004681.1 + 30045 0.67 0.411463
Target:  5'- cGCCGCGGccaucgGCCUcggaGCUCccgcuguCGCGCAGGc -3'
miRNA:   3'- -UGGCGCC------CGGA----CGAGuu-----GUGCGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.