Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 59979 | 0.67 | 0.718337 |
Target: 5'- -cGACgCUGGCGUCUUC-AGUUCGGCGa -3' miRNA: 3'- gcCUG-GGCCGUGGAAGuUCAAGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 57211 | 0.68 | 0.686526 |
Target: 5'- gGGACuuGGC--CUUCAAGaucgUCGGCAc -3' miRNA: 3'- gCCUGggCCGugGAAGUUCa---AGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 51963 | 0.71 | 0.525851 |
Target: 5'- gGGACCaGGUGCCUgccgCGAGgagUCGGCu -3' miRNA: 3'- gCCUGGgCCGUGGAa---GUUCa--AGUCGu -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 40439 | 0.68 | 0.65426 |
Target: 5'- uGGACCuCGGCGCCcUUGAGg-CGGCc -3' miRNA: 3'- gCCUGG-GCCGUGGaAGUUCaaGUCGu -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 27016 | 0.66 | 0.805341 |
Target: 5'- aCGGAuggcacaccgccuaCgCGGuCGCCUUCGAGUccguggUCGGCGu -3' miRNA: 3'- -GCCU--------------GgGCC-GUGGAAGUUCA------AGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 26683 | 0.72 | 0.474908 |
Target: 5'- uGGugCCGGUACuCUgCGAGUUCucguAGCAg -3' miRNA: 3'- gCCugGGCCGUG-GAaGUUCAAG----UCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 21431 | 0.66 | 0.789168 |
Target: 5'- aGGugCUGGCGCCguuccUCAAcccCGGCAa -3' miRNA: 3'- gCCugGGCCGUGGa----AGUUcaaGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 20096 | 0.74 | 0.331275 |
Target: 5'- uGGACCCGGCGCCgagcccacgaUCAcGUUCGGa- -3' miRNA: 3'- gCCUGGGCCGUGGa---------AGUuCAAGUCgu -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 20068 | 1.09 | 0.001378 |
Target: 5'- aCGGACCCGGCACCUUCAAGUUCAGCAa -3' miRNA: 3'- -GCCUGGGCCGUGGAAGUUCAAGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 18552 | 0.67 | 0.73915 |
Target: 5'- gCGGACCCGu--CCaagUCGuGGUUCGGCAa -3' miRNA: 3'- -GCCUGGGCcguGGa--AGU-UCAAGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 18121 | 0.68 | 0.686526 |
Target: 5'- cCGG-CCaGGCACCgggUCAGGU-CGGCc -3' miRNA: 3'- -GCCuGGgCCGUGGa--AGUUCAaGUCGu -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 13172 | 0.66 | 0.769561 |
Target: 5'- -aGACagCGGCGgCUUCGAGcUCGGCGa -3' miRNA: 3'- gcCUGg-GCCGUgGAAGUUCaAGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 7059 | 0.66 | 0.769561 |
Target: 5'- -cGACCgCGGCGCCaUgAAGgaCGGCAc -3' miRNA: 3'- gcCUGG-GCCGUGGaAgUUCaaGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 6457 | 0.67 | 0.759546 |
Target: 5'- uCGGGCgUGGCGCC--CAAGggcugCAGCGc -3' miRNA: 3'- -GCCUGgGCCGUGGaaGUUCaa---GUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 6403 | 0.68 | 0.686526 |
Target: 5'- aGGcCCCGGCGCCgaagCGAccGgcCAGCAc -3' miRNA: 3'- gCCuGGGCCGUGGaa--GUU--CaaGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 1538 | 0.66 | 0.808144 |
Target: 5'- gGuGACCgGGCcaGCCUUCAGcuGggCGGCGg -3' miRNA: 3'- gC-CUGGgCCG--UGGAAGUU--CaaGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 1057 | 0.66 | 0.769561 |
Target: 5'- gGGGCUCGuaGCGCCgguaggUCAGGgugaggUCGGCGu -3' miRNA: 3'- gCCUGGGC--CGUGGa-----AGUUCa-----AGUCGU- -5' |
|||||||
18406 | 3' | -55.1 | NC_004681.1 | + | 511 | 0.68 | 0.697194 |
Target: 5'- uGGACCCGGCcAUCUUCcg---CGGCc -3' miRNA: 3'- gCCUGGGCCG-UGGAAGuucaaGUCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home