miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 75641 0.66 0.783802
Target:  5'- uGGCGCaaaGGGCUCuacCGuGUCGuggauCGUUCGGg -3'
miRNA:   3'- -CCGCGg--CUCGGGu--GC-UAGU-----GCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 21351 0.66 0.783802
Target:  5'- cGGCGUcaCGGGUCCuacCGG-CACGUUCa- -3'
miRNA:   3'- -CCGCG--GCUCGGGu--GCUaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 40240 0.66 0.783802
Target:  5'- cGGCGUCGcGGCCUGCcuGUCcCGggCGGu -3'
miRNA:   3'- -CCGCGGC-UCGGGUGc-UAGuGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 6450 0.66 0.778135
Target:  5'- uGGCGCCcaaGGGCUgcagCGCGGaguUCGCGUacaacucgucggccuUCGGg -3'
miRNA:   3'- -CCGCGG---CUCGG----GUGCU---AGUGCA---------------AGCC- -5'
18406 5' -56.9 NC_004681.1 + 12836 0.66 0.77433
Target:  5'- uGGCGCCGguacguccAGCCUGCag-CugGguacgUCGGg -3'
miRNA:   3'- -CCGCGGC--------UCGGGUGcuaGugCa----AGCC- -5'
18406 5' -56.9 NC_004681.1 + 30270 0.66 0.77433
Target:  5'- cGGCGUCGAGaCCAcCGAUC-CGU--GGu -3'
miRNA:   3'- -CCGCGGCUCgGGU-GCUAGuGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 44262 0.66 0.764726
Target:  5'- gGGCGCCGuAGCacuCGuauUCGCGgcCGGu -3'
miRNA:   3'- -CCGCGGC-UCGgguGCu--AGUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 51594 0.66 0.764726
Target:  5'- cGGUguaGCCGAGCUggcggcaGCGGUCGCccaGUUCGa -3'
miRNA:   3'- -CCG---CGGCUCGGg------UGCUAGUG---CAAGCc -5'
18406 5' -56.9 NC_004681.1 + 23941 0.66 0.764726
Target:  5'- cGGCGCCGGaUCgGCGugcucaaCACGUUCGc -3'
miRNA:   3'- -CCGCGGCUcGGgUGCua-----GUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 53628 0.66 0.752059
Target:  5'- cGCGCUGGccguugagcuugacGCCCGCGAugUCACcg-CGGu -3'
miRNA:   3'- cCGCGGCU--------------CGGGUGCU--AGUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 51507 0.66 0.745159
Target:  5'- uGGCGuuGAGCgCGgaGggCACGUUCu- -3'
miRNA:   3'- -CCGCggCUCGgGUg-CuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 7360 0.66 0.735217
Target:  5'- cGGCGCCGAGgUgGaCGGcCGCGUcgUGGa -3'
miRNA:   3'- -CCGCGGCUCgGgU-GCUaGUGCAa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 42242 0.67 0.72518
Target:  5'- cGGcCGCCGAgcugcuggucccGCCCGCGGaaggcgccuUCACGgccUGGa -3'
miRNA:   3'- -CC-GCGGCU------------CGGGUGCU---------AGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 6491 0.67 0.72518
Target:  5'- cGGCGCCGGGgccuccuccCCCuCGAcagCGCcaUCGGg -3'
miRNA:   3'- -CCGCGGCUC---------GGGuGCUa--GUGcaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 46845 0.67 0.72518
Target:  5'- aGCGCCGGuCCCAC---CACGUUCa- -3'
miRNA:   3'- cCGCGGCUcGGGUGcuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 40054 0.67 0.715061
Target:  5'- cGGCGCCGAcGCgCGCgGAUCGacuuguCGUUgaggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGgGUG-CUAGU------GCAA----GCC- -5'
18406 5' -56.9 NC_004681.1 + 7014 0.67 0.715061
Target:  5'- gGGUGgaaCGAGCCCACGGUgGUGgccaCGGa -3'
miRNA:   3'- -CCGCg--GCUCGGGUGCUAgUGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 72758 0.67 0.715061
Target:  5'- aGGCuCCGGGaa-ACGGUUACgGUUCGGg -3'
miRNA:   3'- -CCGcGGCUCgggUGCUAGUG-CAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 45044 0.67 0.715061
Target:  5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3'
miRNA:   3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.