Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 20102 | 1.13 | 0.000717 |
Target: 5'- cGGCGCCGAGCCCACGAUCACGUUCGGa -3' miRNA: 3'- -CCGCGGCUCGGGUGCUAGUGCAAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 10658 | 0.76 | 0.261795 |
Target: 5'- uGGCGCCcccgguGCCCGCGGccgUCGCGUgcaaggCGGg -3' miRNA: 3'- -CCGCGGcu----CGGGUGCU---AGUGCAa-----GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 66955 | 0.73 | 0.347385 |
Target: 5'- cGCGCCGAGCUCgaagGCGAcaucggggacagUCACGU-CGGc -3' miRNA: 3'- cCGCGGCUCGGG----UGCU------------AGUGCAaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 359 | 0.73 | 0.363459 |
Target: 5'- gGGCGCCauccgcgaggacGAGCCCGCGGUCAagaccUGGg -3' miRNA: 3'- -CCGCGG------------CUCGGGUGCUAGUgcaa-GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 3409 | 0.73 | 0.383417 |
Target: 5'- cGGCGCCcgcgcGAGCCaCGCGcgCACGgacuaacacaaucacUUCGGu -3' miRNA: 3'- -CCGCGG-----CUCGG-GUGCuaGUGC---------------AAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 62100 | 0.73 | 0.388519 |
Target: 5'- cGCGUCGAGUaggCCGCGAUCugGU-CGa -3' miRNA: 3'- cCGCGGCUCG---GGUGCUAGugCAaGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 6388 | 0.72 | 0.405845 |
Target: 5'- cGCGgCaGGCCCAUGAUCucgcggcccuCGUUCGGg -3' miRNA: 3'- cCGCgGcUCGGGUGCUAGu---------GCAAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 63742 | 0.71 | 0.470116 |
Target: 5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3' miRNA: 3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 31246 | 0.71 | 0.489421 |
Target: 5'- cGGCGCCGAGUguuuggCUACGGcaACG-UCGGa -3' miRNA: 3'- -CCGCGGCUCG------GGUGCUagUGCaAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 18195 | 0.71 | 0.473947 |
Target: 5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3' miRNA: 3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 23633 | 0.71 | 0.470116 |
Target: 5'- uGGUGCCGGGggcaaUCACGAUgACGUccugCGGg -3' miRNA: 3'- -CCGCGGCUCg----GGUGCUAgUGCAa---GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 32097 | 0.7 | 0.53817 |
Target: 5'- cGGCGCCGAucagcgagccgauGCUgGCGAugaUCugGUUCa- -3' miRNA: 3'- -CCGCGGCU-------------CGGgUGCU---AGugCAAGcc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 28441 | 0.7 | 0.509088 |
Target: 5'- cGGCGCCGGGgUgACGAggaCAuCGUUCGu -3' miRNA: 3'- -CCGCGGCUCgGgUGCUa--GU-GCAAGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 9103 | 0.69 | 0.611369 |
Target: 5'- cGGCGCCGcuGGCUCGgGcUCugGCGUUgCGGg -3' miRNA: 3'- -CCGCGGC--UCGGGUgCuAG--UGCAA-GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 28042 | 0.69 | 0.580187 |
Target: 5'- cGGCGCUGGcGCUgGCGGUCgagGCGguggCGGc -3' miRNA: 3'- -CCGCGGCU-CGGgUGCUAG---UGCaa--GCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 17306 | 0.69 | 0.611369 |
Target: 5'- uGGCGCgCGuGCCCGCGGgacgcuaCACGca-GGa -3' miRNA: 3'- -CCGCG-GCuCGGGUGCUa------GUGCaagCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 33494 | 0.69 | 0.600949 |
Target: 5'- uGGCGCCGAugcgguucagguGCCaCACGG-CGCGcgCGa -3' miRNA: 3'- -CCGCGGCU------------CGG-GUGCUaGUGCaaGCc -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 4928 | 0.68 | 0.620761 |
Target: 5'- cGGCGUCGAuGCgCUugGcagccauGUCGCGgUCGGg -3' miRNA: 3'- -CCGCGGCU-CG-GGugC-------UAGUGCaAGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 32139 | 0.68 | 0.621806 |
Target: 5'- uGCGCUGcuuGCCCAgGAUCACac-CGGc -3' miRNA: 3'- cCGCGGCu--CGGGUgCUAGUGcaaGCC- -5' |
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18406 | 5' | -56.9 | NC_004681.1 | + | 23355 | 0.68 | 0.657301 |
Target: 5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3' miRNA: 3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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