miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 54698 0.68 0.632251
Target:  5'- gGGUGCCGucgauGUCCACGAUgAUug-CGGg -3'
miRNA:   3'- -CCGCGGCu----CGGGUGCUAgUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 23355 0.68 0.657301
Target:  5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3'
miRNA:   3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 37820 0.68 0.66355
Target:  5'- uGCGCacacaggaGAG-CgACGAUCACGUUCGu -3'
miRNA:   3'- cCGCGg-------CUCgGgUGCUAGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 24187 0.68 0.673942
Target:  5'- uGGCGCCGgaaccuugcuGGCCCACGGcgccaccgacaaUgGCGUccaGGa -3'
miRNA:   3'- -CCGCGGC----------UCGGGUGCU------------AgUGCAag-CC- -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 60389 0.67 0.69461
Target:  5'- uGGCGgCGAauGUCCugGAgCACGguaCGGg -3'
miRNA:   3'- -CCGCgGCU--CGGGugCUaGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 50317 0.67 0.69461
Target:  5'- gGGCGCCauugGAGCUgGCGAcCACcUUgGGg -3'
miRNA:   3'- -CCGCGG----CUCGGgUGCUaGUGcAAgCC- -5'
18406 5' -56.9 NC_004681.1 + 32882 0.67 0.703844
Target:  5'- gGGCGCCGAGgugguguCCCGgGuccucuuggaaAUCcUGUUCGGg -3'
miRNA:   3'- -CCGCGGCUC-------GGGUgC-----------UAGuGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 72758 0.67 0.715061
Target:  5'- aGGCuCCGGGaa-ACGGUUACgGUUCGGg -3'
miRNA:   3'- -CCGcGGCUCgggUGCUAGUG-CAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 7014 0.67 0.715061
Target:  5'- gGGUGgaaCGAGCCCACGGUgGUGgccaCGGa -3'
miRNA:   3'- -CCGCg--GCUCGGGUGCUAgUGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 45044 0.67 0.715061
Target:  5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3'
miRNA:   3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 40054 0.67 0.715061
Target:  5'- cGGCGCCGAcGCgCGCgGAUCGacuuguCGUUgaggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGgGUG-CUAGU------GCAA----GCC- -5'
18406 5' -56.9 NC_004681.1 + 46845 0.67 0.72518
Target:  5'- aGCGCCGGuCCCAC---CACGUUCa- -3'
miRNA:   3'- cCGCGGCUcGGGUGcuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 6491 0.67 0.72518
Target:  5'- cGGCGCCGGGgccuccuccCCCuCGAcagCGCcaUCGGg -3'
miRNA:   3'- -CCGCGGCUC---------GGGuGCUa--GUGcaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 42242 0.67 0.72518
Target:  5'- cGGcCGCCGAgcugcuggucccGCCCGCGGaaggcgccuUCACGgccUGGa -3'
miRNA:   3'- -CC-GCGGCU------------CGGGUGCU---------AGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 7360 0.66 0.735217
Target:  5'- cGGCGCCGAGgUgGaCGGcCGCGUcgUGGa -3'
miRNA:   3'- -CCGCGGCUCgGgU-GCUaGUGCAa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 51507 0.66 0.745159
Target:  5'- uGGCGuuGAGCgCGgaGggCACGUUCu- -3'
miRNA:   3'- -CCGCggCUCGgGUg-CuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 53628 0.66 0.752059
Target:  5'- cGCGCUGGccguugagcuugacGCCCGCGAugUCACcg-CGGu -3'
miRNA:   3'- cCGCGGCU--------------CGGGUGCU--AGUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 23941 0.66 0.764726
Target:  5'- cGGCGCCGGaUCgGCGugcucaaCACGUUCGc -3'
miRNA:   3'- -CCGCGGCUcGGgUGCua-----GUGCAAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.