miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 32882 0.67 0.703844
Target:  5'- gGGCGCCGAGgugguguCCCGgGuccucuuggaaAUCcUGUUCGGg -3'
miRNA:   3'- -CCGCGGCUC-------GGGUgC-----------UAGuGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 50317 0.67 0.69461
Target:  5'- gGGCGCCauugGAGCUgGCGAcCACcUUgGGg -3'
miRNA:   3'- -CCGCGG----CUCGGgUGCUaGUGcAAgCC- -5'
18406 5' -56.9 NC_004681.1 + 60389 0.67 0.69461
Target:  5'- uGGCGgCGAauGUCCugGAgCACGguaCGGg -3'
miRNA:   3'- -CCGCgGCU--CGGGugCUaGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 24187 0.68 0.673942
Target:  5'- uGGCGCCGgaaccuugcuGGCCCACGGcgccaccgacaaUgGCGUccaGGa -3'
miRNA:   3'- -CCGCGGC----------UCGGGUGCU------------AgUGCAag-CC- -5'
18406 5' -56.9 NC_004681.1 + 37820 0.68 0.66355
Target:  5'- uGCGCacacaggaGAG-CgACGAUCACGUUCGu -3'
miRNA:   3'- cCGCGg-------CUCgGgUGCUAGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 23355 0.68 0.657301
Target:  5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3'
miRNA:   3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 54698 0.68 0.632251
Target:  5'- gGGUGCCGucgauGUCCACGAUgAUug-CGGg -3'
miRNA:   3'- -CCGCGGCu----CGGGUGCUAgUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 32139 0.68 0.621806
Target:  5'- uGCGCUGcuuGCCCAgGAUCACac-CGGc -3'
miRNA:   3'- cCGCGGCu--CGGGUgCUAGUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 9257 0.68 0.621806
Target:  5'- aGGCGUCGAagacGUucuCCGCGAUCuccGCGgcggUCGGg -3'
miRNA:   3'- -CCGCGGCU----CG---GGUGCUAG---UGCa---AGCC- -5'
18406 5' -56.9 NC_004681.1 + 4928 0.68 0.620761
Target:  5'- cGGCGUCGAuGCgCUugGcagccauGUCGCGgUCGGg -3'
miRNA:   3'- -CCGCGGCU-CG-GGugC-------UAGUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 9103 0.69 0.611369
Target:  5'- cGGCGCCGcuGGCUCGgGcUCugGCGUUgCGGg -3'
miRNA:   3'- -CCGCGGC--UCGGGUgCuAG--UGCAA-GCC- -5'
18406 5' -56.9 NC_004681.1 + 17306 0.69 0.611369
Target:  5'- uGGCGCgCGuGCCCGCGGgacgcuaCACGca-GGa -3'
miRNA:   3'- -CCGCG-GCuCGGGUGCUa------GUGCaagCC- -5'
18406 5' -56.9 NC_004681.1 + 33494 0.69 0.600949
Target:  5'- uGGCGCCGAugcgguucagguGCCaCACGG-CGCGcgCGa -3'
miRNA:   3'- -CCGCGGCU------------CGG-GUGCUaGUGCaaGCc -5'
18406 5' -56.9 NC_004681.1 + 28042 0.69 0.580187
Target:  5'- cGGCGCUGGcGCUgGCGGUCgagGCGguggCGGc -3'
miRNA:   3'- -CCGCGGCU-CGGgUGCUAG---UGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 32097 0.7 0.53817
Target:  5'- cGGCGCCGAucagcgagccgauGCUgGCGAugaUCugGUUCa- -3'
miRNA:   3'- -CCGCGGCU-------------CGGgUGCU---AGugCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 28441 0.7 0.509088
Target:  5'- cGGCGCCGGGgUgACGAggaCAuCGUUCGu -3'
miRNA:   3'- -CCGCGGCUCgGgUGCUa--GU-GCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 31246 0.71 0.489421
Target:  5'- cGGCGCCGAGUguuuggCUACGGcaACG-UCGGa -3'
miRNA:   3'- -CCGCGGCUCG------GGUGCUagUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 18195 0.71 0.473947
Target:  5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 63742 0.71 0.470116
Target:  5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3'
miRNA:   3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.