miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 63742 0.71 0.470116
Target:  5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3'
miRNA:   3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 6388 0.72 0.405845
Target:  5'- cGCGgCaGGCCCAUGAUCucgcggcccuCGUUCGGg -3'
miRNA:   3'- cCGCgGcUCGGGUGCUAGu---------GCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 62100 0.73 0.388519
Target:  5'- cGCGUCGAGUaggCCGCGAUCugGU-CGa -3'
miRNA:   3'- cCGCGGCUCG---GGUGCUAGugCAaGCc -5'
18406 5' -56.9 NC_004681.1 + 3409 0.73 0.383417
Target:  5'- cGGCGCCcgcgcGAGCCaCGCGcgCACGgacuaacacaaucacUUCGGu -3'
miRNA:   3'- -CCGCGG-----CUCGG-GUGCuaGUGC---------------AAGCC- -5'
18406 5' -56.9 NC_004681.1 + 359 0.73 0.363459
Target:  5'- gGGCGCCauccgcgaggacGAGCCCGCGGUCAagaccUGGg -3'
miRNA:   3'- -CCGCGG------------CUCGGGUGCUAGUgcaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 66955 0.73 0.347385
Target:  5'- cGCGCCGAGCUCgaagGCGAcaucggggacagUCACGU-CGGc -3'
miRNA:   3'- cCGCGGCUCGGG----UGCU------------AGUGCAaGCC- -5'
18406 5' -56.9 NC_004681.1 + 10658 0.76 0.261795
Target:  5'- uGGCGCCcccgguGCCCGCGGccgUCGCGUgcaaggCGGg -3'
miRNA:   3'- -CCGCGGcu----CGGGUGCU---AGUGCAa-----GCC- -5'
18406 5' -56.9 NC_004681.1 + 20102 1.13 0.000717
Target:  5'- cGGCGCCGAGCCCACGAUCACGUUCGGa -3'
miRNA:   3'- -CCGCGGCUCGGGUGCUAGUGCAAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.