miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 359 0.73 0.363459
Target:  5'- gGGCGCCauccgcgaggacGAGCCCGCGGUCAagaccUGGg -3'
miRNA:   3'- -CCGCGG------------CUCGGGUGCUAGUgcaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 3409 0.73 0.383417
Target:  5'- cGGCGCCcgcgcGAGCCaCGCGcgCACGgacuaacacaaucacUUCGGu -3'
miRNA:   3'- -CCGCGG-----CUCGG-GUGCuaGUGC---------------AAGCC- -5'
18406 5' -56.9 NC_004681.1 + 4928 0.68 0.620761
Target:  5'- cGGCGUCGAuGCgCUugGcagccauGUCGCGgUCGGg -3'
miRNA:   3'- -CCGCGGCU-CG-GGugC-------UAGUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 6388 0.72 0.405845
Target:  5'- cGCGgCaGGCCCAUGAUCucgcggcccuCGUUCGGg -3'
miRNA:   3'- cCGCgGcUCGGGUGCUAGu---------GCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 6450 0.66 0.778135
Target:  5'- uGGCGCCcaaGGGCUgcagCGCGGaguUCGCGUacaacucgucggccuUCGGg -3'
miRNA:   3'- -CCGCGG---CUCGG----GUGCU---AGUGCA---------------AGCC- -5'
18406 5' -56.9 NC_004681.1 + 6491 0.67 0.72518
Target:  5'- cGGCGCCGGGgccuccuccCCCuCGAcagCGCcaUCGGg -3'
miRNA:   3'- -CCGCGGCUC---------GGGuGCUa--GUGcaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 7014 0.67 0.715061
Target:  5'- gGGUGgaaCGAGCCCACGGUgGUGgccaCGGa -3'
miRNA:   3'- -CCGCg--GCUCGGGUGCUAgUGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 7360 0.66 0.735217
Target:  5'- cGGCGCCGAGgUgGaCGGcCGCGUcgUGGa -3'
miRNA:   3'- -CCGCGGCUCgGgU-GCUaGUGCAa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 9103 0.69 0.611369
Target:  5'- cGGCGCCGcuGGCUCGgGcUCugGCGUUgCGGg -3'
miRNA:   3'- -CCGCGGC--UCGGGUgCuAG--UGCAA-GCC- -5'
18406 5' -56.9 NC_004681.1 + 9257 0.68 0.621806
Target:  5'- aGGCGUCGAagacGUucuCCGCGAUCuccGCGgcggUCGGg -3'
miRNA:   3'- -CCGCGGCU----CG---GGUGCUAG---UGCa---AGCC- -5'
18406 5' -56.9 NC_004681.1 + 10658 0.76 0.261795
Target:  5'- uGGCGCCcccgguGCCCGCGGccgUCGCGUgcaaggCGGg -3'
miRNA:   3'- -CCGCGGcu----CGGGUGCU---AGUGCAa-----GCC- -5'
18406 5' -56.9 NC_004681.1 + 12836 0.66 0.77433
Target:  5'- uGGCGCCGguacguccAGCCUGCag-CugGguacgUCGGg -3'
miRNA:   3'- -CCGCGGC--------UCGGGUGcuaGugCa----AGCC- -5'
18406 5' -56.9 NC_004681.1 + 17306 0.69 0.611369
Target:  5'- uGGCGCgCGuGCCCGCGGgacgcuaCACGca-GGa -3'
miRNA:   3'- -CCGCG-GCuCGGGUGCUa------GUGCaagCC- -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 18195 0.71 0.473947
Target:  5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 20102 1.13 0.000717
Target:  5'- cGGCGCCGAGCCCACGAUCACGUUCGGa -3'
miRNA:   3'- -CCGCGGCUCGGGUGCUAGUGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 21351 0.66 0.783802
Target:  5'- cGGCGUcaCGGGUCCuacCGG-CACGUUCa- -3'
miRNA:   3'- -CCGCG--GCUCGGGu--GCUaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 23355 0.68 0.657301
Target:  5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3'
miRNA:   3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 23633 0.71 0.470116
Target:  5'- uGGUGCCGGGggcaaUCACGAUgACGUccugCGGg -3'
miRNA:   3'- -CCGCGGCUCg----GGUGCUAgUGCAa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.