Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 75641 | 0.66 | 0.783802 |
Target: 5'- uGGCGCaaaGGGCUCuacCGuGUCGuggauCGUUCGGg -3' miRNA: 3'- -CCGCGg--CUCGGGu--GC-UAGU-----GCAAGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 72758 | 0.67 | 0.715061 |
Target: 5'- aGGCuCCGGGaa-ACGGUUACgGUUCGGg -3' miRNA: 3'- -CCGcGGCUCgggUGCUAGUG-CAAGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 66955 | 0.73 | 0.347385 |
Target: 5'- cGCGCCGAGCUCgaagGCGAcaucggggacagUCACGU-CGGc -3' miRNA: 3'- cCGCGGCUCGGG----UGCU------------AGUGCAaGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 63742 | 0.71 | 0.470116 |
Target: 5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3' miRNA: 3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 62100 | 0.73 | 0.388519 |
Target: 5'- cGCGUCGAGUaggCCGCGAUCugGU-CGa -3' miRNA: 3'- cCGCGGCUCG---GGUGCUAGugCAaGCc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 60389 | 0.67 | 0.69461 |
Target: 5'- uGGCGgCGAauGUCCugGAgCACGguaCGGg -3' miRNA: 3'- -CCGCgGCU--CGGGugCUaGUGCaa-GCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 54698 | 0.68 | 0.632251 |
Target: 5'- gGGUGCCGucgauGUCCACGAUgAUug-CGGg -3' miRNA: 3'- -CCGCGGCu----CGGGUGCUAgUGcaaGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 53628 | 0.66 | 0.752059 |
Target: 5'- cGCGCUGGccguugagcuugacGCCCGCGAugUCACcg-CGGu -3' miRNA: 3'- cCGCGGCU--------------CGGGUGCU--AGUGcaaGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 51594 | 0.66 | 0.764726 |
Target: 5'- cGGUguaGCCGAGCUggcggcaGCGGUCGCccaGUUCGa -3' miRNA: 3'- -CCG---CGGCUCGGg------UGCUAGUG---CAAGCc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 51507 | 0.66 | 0.745159 |
Target: 5'- uGGCGuuGAGCgCGgaGggCACGUUCu- -3' miRNA: 3'- -CCGCggCUCGgGUg-CuaGUGCAAGcc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 50317 | 0.67 | 0.69461 |
Target: 5'- gGGCGCCauugGAGCUgGCGAcCACcUUgGGg -3' miRNA: 3'- -CCGCGG----CUCGGgUGCUaGUGcAAgCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 46845 | 0.67 | 0.72518 |
Target: 5'- aGCGCCGGuCCCAC---CACGUUCa- -3' miRNA: 3'- cCGCGGCUcGGGUGcuaGUGCAAGcc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 45044 | 0.67 | 0.715061 |
Target: 5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3' miRNA: 3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 44262 | 0.66 | 0.764726 |
Target: 5'- gGGCGCCGuAGCacuCGuauUCGCGgcCGGu -3' miRNA: 3'- -CCGCGGC-UCGgguGCu--AGUGCaaGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 42242 | 0.67 | 0.72518 |
Target: 5'- cGGcCGCCGAgcugcuggucccGCCCGCGGaaggcgccuUCACGgccUGGa -3' miRNA: 3'- -CC-GCGGCU------------CGGGUGCU---------AGUGCaa-GCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 40240 | 0.66 | 0.783802 |
Target: 5'- cGGCGUCGcGGCCUGCcuGUCcCGggCGGu -3' miRNA: 3'- -CCGCGGC-UCGGGUGc-UAGuGCaaGCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 40054 | 0.67 | 0.715061 |
Target: 5'- cGGCGCCGAcGCgCGCgGAUCGacuuguCGUUgaggCGGg -3' miRNA: 3'- -CCGCGGCU-CGgGUG-CUAGU------GCAA----GCC- -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 37820 | 0.68 | 0.66355 |
Target: 5'- uGCGCacacaggaGAG-CgACGAUCACGUUCGu -3' miRNA: 3'- cCGCGg-------CUCgGgUGCUAGUGCAAGCc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 33494 | 0.69 | 0.600949 |
Target: 5'- uGGCGCCGAugcgguucagguGCCaCACGG-CGCGcgCGa -3' miRNA: 3'- -CCGCGGCU------------CGG-GUGCUaGUGCaaGCc -5' |
|||||||
18406 | 5' | -56.9 | NC_004681.1 | + | 32882 | 0.67 | 0.703844 |
Target: 5'- gGGCGCCGAGgugguguCCCGgGuccucuuggaaAUCcUGUUCGGg -3' miRNA: 3'- -CCGCGGCUC-------GGGUgC-----------UAGuGCAAGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home