miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 32139 0.68 0.621806
Target:  5'- uGCGCUGcuuGCCCAgGAUCACac-CGGc -3'
miRNA:   3'- cCGCGGCu--CGGGUgCUAGUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 32097 0.7 0.53817
Target:  5'- cGGCGCCGAucagcgagccgauGCUgGCGAugaUCugGUUCa- -3'
miRNA:   3'- -CCGCGGCU-------------CGGgUGCU---AGugCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 31246 0.71 0.489421
Target:  5'- cGGCGCCGAGUguuuggCUACGGcaACG-UCGGa -3'
miRNA:   3'- -CCGCGGCUCG------GGUGCUagUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 30270 0.66 0.77433
Target:  5'- cGGCGUCGAGaCCAcCGAUC-CGU--GGu -3'
miRNA:   3'- -CCGCGGCUCgGGU-GCUAGuGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 28441 0.7 0.509088
Target:  5'- cGGCGCCGGGgUgACGAggaCAuCGUUCGu -3'
miRNA:   3'- -CCGCGGCUCgGgUGCUa--GU-GCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 28042 0.69 0.580187
Target:  5'- cGGCGCUGGcGCUgGCGGUCgagGCGguggCGGc -3'
miRNA:   3'- -CCGCGGCU-CGGgUGCUAG---UGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 24187 0.68 0.673942
Target:  5'- uGGCGCCGgaaccuugcuGGCCCACGGcgccaccgacaaUgGCGUccaGGa -3'
miRNA:   3'- -CCGCGGC----------UCGGGUGCU------------AgUGCAag-CC- -5'
18406 5' -56.9 NC_004681.1 + 23941 0.66 0.764726
Target:  5'- cGGCGCCGGaUCgGCGugcucaaCACGUUCGc -3'
miRNA:   3'- -CCGCGGCUcGGgUGCua-----GUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 23633 0.71 0.470116
Target:  5'- uGGUGCCGGGggcaaUCACGAUgACGUccugCGGg -3'
miRNA:   3'- -CCGCGGCUCg----GGUGCUAgUGCAa---GCC- -5'
18406 5' -56.9 NC_004681.1 + 23355 0.68 0.657301
Target:  5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3'
miRNA:   3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 21351 0.66 0.783802
Target:  5'- cGGCGUcaCGGGUCCuacCGG-CACGUUCa- -3'
miRNA:   3'- -CCGCG--GCUCGGGu--GCUaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 20102 1.13 0.000717
Target:  5'- cGGCGCCGAGCCCACGAUCACGUUCGGa -3'
miRNA:   3'- -CCGCGGCUCGGGUGCUAGUGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 18195 0.71 0.473947
Target:  5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 17306 0.69 0.611369
Target:  5'- uGGCGCgCGuGCCCGCGGgacgcuaCACGca-GGa -3'
miRNA:   3'- -CCGCG-GCuCGGGUGCUa------GUGCaagCC- -5'
18406 5' -56.9 NC_004681.1 + 12836 0.66 0.77433
Target:  5'- uGGCGCCGguacguccAGCCUGCag-CugGguacgUCGGg -3'
miRNA:   3'- -CCGCGGC--------UCGGGUGcuaGugCa----AGCC- -5'
18406 5' -56.9 NC_004681.1 + 10658 0.76 0.261795
Target:  5'- uGGCGCCcccgguGCCCGCGGccgUCGCGUgcaaggCGGg -3'
miRNA:   3'- -CCGCGGcu----CGGGUGCU---AGUGCAa-----GCC- -5'
18406 5' -56.9 NC_004681.1 + 9257 0.68 0.621806
Target:  5'- aGGCGUCGAagacGUucuCCGCGAUCuccGCGgcggUCGGg -3'
miRNA:   3'- -CCGCGGCU----CG---GGUGCUAG---UGCa---AGCC- -5'
18406 5' -56.9 NC_004681.1 + 9103 0.69 0.611369
Target:  5'- cGGCGCCGcuGGCUCGgGcUCugGCGUUgCGGg -3'
miRNA:   3'- -CCGCGGC--UCGGGUgCuAG--UGCAA-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.