miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 20102 1.13 0.000717
Target:  5'- cGGCGCCGAGCCCACGAUCACGUUCGGa -3'
miRNA:   3'- -CCGCGGCUCGGGUGCUAGUGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 60389 0.67 0.69461
Target:  5'- uGGCGgCGAauGUCCugGAgCACGguaCGGg -3'
miRNA:   3'- -CCGCgGCU--CGGGugCUaGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 32882 0.67 0.703844
Target:  5'- gGGCGCCGAGgugguguCCCGgGuccucuuggaaAUCcUGUUCGGg -3'
miRNA:   3'- -CCGCGGCUC-------GGGUgC-----------UAGuGCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 42242 0.67 0.72518
Target:  5'- cGGcCGCCGAgcugcuggucccGCCCGCGGaaggcgccuUCACGgccUGGa -3'
miRNA:   3'- -CC-GCGGCU------------CGGGUGCU---------AGUGCaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 17616 0.66 0.745159
Target:  5'- gGGCGCgGAcgacCCCGCGuUCACG-UCGc -3'
miRNA:   3'- -CCGCGgCUc---GGGUGCuAGUGCaAGCc -5'
18406 5' -56.9 NC_004681.1 + 23941 0.66 0.764726
Target:  5'- cGGCGCCGGaUCgGCGugcucaaCACGUUCGc -3'
miRNA:   3'- -CCGCGGCUcGGgUGCua-----GUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 12836 0.66 0.77433
Target:  5'- uGGCGCCGguacguccAGCCUGCag-CugGguacgUCGGg -3'
miRNA:   3'- -CCGCGGC--------UCGGGUGcuaGugCa----AGCC- -5'
18406 5' -56.9 NC_004681.1 + 30270 0.66 0.77433
Target:  5'- cGGCGUCGAGaCCAcCGAUC-CGU--GGu -3'
miRNA:   3'- -CCGCGGCUCgGGU-GCUAGuGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 21351 0.66 0.783802
Target:  5'- cGGCGUcaCGGGUCCuacCGG-CACGUUCa- -3'
miRNA:   3'- -CCGCG--GCUCGGGu--GCUaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 18743 0.67 0.685332
Target:  5'- cGGCGgCGAGgCCGCGcgugacaccgcacgCACGUUCa- -3'
miRNA:   3'- -CCGCgGCUCgGGUGCua------------GUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 23355 0.68 0.657301
Target:  5'- aGGCGcCCGAgguggucaaccuccuGCCCGCcucCACGUUCGc -3'
miRNA:   3'- -CCGC-GGCU---------------CGGGUGcuaGUGCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 10658 0.76 0.261795
Target:  5'- uGGCGCCcccgguGCCCGCGGccgUCGCGUgcaaggCGGg -3'
miRNA:   3'- -CCGCGGcu----CGGGUGCU---AGUGCAa-----GCC- -5'
18406 5' -56.9 NC_004681.1 + 66955 0.73 0.347385
Target:  5'- cGCGCCGAGCUCgaagGCGAcaucggggacagUCACGU-CGGc -3'
miRNA:   3'- cCGCGGCUCGGG----UGCU------------AGUGCAaGCC- -5'
18406 5' -56.9 NC_004681.1 + 359 0.73 0.363459
Target:  5'- gGGCGCCauccgcgaggacGAGCCCGCGGUCAagaccUGGg -3'
miRNA:   3'- -CCGCGG------------CUCGGGUGCUAGUgcaa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 3409 0.73 0.383417
Target:  5'- cGGCGCCcgcgcGAGCCaCGCGcgCACGgacuaacacaaucacUUCGGu -3'
miRNA:   3'- -CCGCGG-----CUCGG-GUGCuaGUGC---------------AAGCC- -5'
18406 5' -56.9 NC_004681.1 + 31246 0.71 0.489421
Target:  5'- cGGCGCCGAGUguuuggCUACGGcaACG-UCGGa -3'
miRNA:   3'- -CCGCGGCUCG------GGUGCUagUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 28042 0.69 0.580187
Target:  5'- cGGCGCUGGcGCUgGCGGUCgagGCGguggCGGc -3'
miRNA:   3'- -CCGCGGCU-CGGgUGCUAG---UGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 9103 0.69 0.611369
Target:  5'- cGGCGCCGcuGGCUCGgGcUCugGCGUUgCGGg -3'
miRNA:   3'- -CCGCGGC--UCGGGUgCuAG--UGCAA-GCC- -5'
18406 5' -56.9 NC_004681.1 + 17306 0.69 0.611369
Target:  5'- uGGCGCgCGuGCCCGCGGgacgcuaCACGca-GGa -3'
miRNA:   3'- -CCGCG-GCuCGGGUGCUa------GUGCaagCC- -5'
18406 5' -56.9 NC_004681.1 + 40240 0.66 0.783802
Target:  5'- cGGCGUCGcGGCCUGCcuGUCcCGggCGGu -3'
miRNA:   3'- -CCGCGGC-UCGGGUGc-UAGuGCaaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.