miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18406 5' -56.9 NC_004681.1 + 24187 0.68 0.673942
Target:  5'- uGGCGCCGgaaccuugcuGGCCCACGGcgccaccgacaaUgGCGUccaGGa -3'
miRNA:   3'- -CCGCGGC----------UCGGGUGCU------------AgUGCAag-CC- -5'
18406 5' -56.9 NC_004681.1 + 50317 0.67 0.69461
Target:  5'- gGGCGCCauugGAGCUgGCGAcCACcUUgGGg -3'
miRNA:   3'- -CCGCGG----CUCGGgUGCUaGUGcAAgCC- -5'
18406 5' -56.9 NC_004681.1 + 72758 0.67 0.715061
Target:  5'- aGGCuCCGGGaa-ACGGUUACgGUUCGGg -3'
miRNA:   3'- -CCGcGGCUCgggUGCUAGUG-CAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 45044 0.67 0.715061
Target:  5'- aGC-CCGAGCUCGCGGUggcggcuccacCGCGUggGGg -3'
miRNA:   3'- cCGcGGCUCGGGUGCUA-----------GUGCAagCC- -5'
18406 5' -56.9 NC_004681.1 + 7014 0.67 0.715061
Target:  5'- gGGUGgaaCGAGCCCACGGUgGUGgccaCGGa -3'
miRNA:   3'- -CCGCg--GCUCGGGUGCUAgUGCaa--GCC- -5'
18406 5' -56.9 NC_004681.1 + 40054 0.67 0.715061
Target:  5'- cGGCGCCGAcGCgCGCgGAUCGacuuguCGUUgaggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGgGUG-CUAGU------GCAA----GCC- -5'
18406 5' -56.9 NC_004681.1 + 46845 0.67 0.72518
Target:  5'- aGCGCCGGuCCCAC---CACGUUCa- -3'
miRNA:   3'- cCGCGGCUcGGGUGcuaGUGCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 6491 0.67 0.72518
Target:  5'- cGGCGCCGGGgccuccuccCCCuCGAcagCGCcaUCGGg -3'
miRNA:   3'- -CCGCGGCUC---------GGGuGCUa--GUGcaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 7360 0.66 0.735217
Target:  5'- cGGCGCCGAGgUgGaCGGcCGCGUcgUGGa -3'
miRNA:   3'- -CCGCGGCUCgGgU-GCUaGUGCAa-GCC- -5'
18406 5' -56.9 NC_004681.1 + 54698 0.68 0.632251
Target:  5'- gGGUGCCGucgauGUCCACGAUgAUug-CGGg -3'
miRNA:   3'- -CCGCGGCu----CGGGUGCUAgUGcaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 9257 0.68 0.621806
Target:  5'- aGGCGUCGAagacGUucuCCGCGAUCuccGCGgcggUCGGg -3'
miRNA:   3'- -CCGCGGCU----CG---GGUGCUAG---UGCa---AGCC- -5'
18406 5' -56.9 NC_004681.1 + 6388 0.72 0.405845
Target:  5'- cGCGgCaGGCCCAUGAUCucgcggcccuCGUUCGGg -3'
miRNA:   3'- cCGCgGcUCGGGUGCUAGu---------GCAAGCC- -5'
18406 5' -56.9 NC_004681.1 + 63742 0.71 0.470116
Target:  5'- -cCGCUGAGCCCAC-AUCAgGUUCu- -3'
miRNA:   3'- ccGCGGCUCGGGUGcUAGUgCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 23633 0.71 0.470116
Target:  5'- uGGUGCCGGGggcaaUCACGAUgACGUccugCGGg -3'
miRNA:   3'- -CCGCGGCUCg----GGUGCUAgUGCAa---GCC- -5'
18406 5' -56.9 NC_004681.1 + 18195 0.71 0.473947
Target:  5'- gGGCGCCGAuGCCgGgGAUgccgaugcccauaccCGCGggCGGg -3'
miRNA:   3'- -CCGCGGCU-CGGgUgCUA---------------GUGCaaGCC- -5'
18406 5' -56.9 NC_004681.1 + 28441 0.7 0.509088
Target:  5'- cGGCGCCGGGgUgACGAggaCAuCGUUCGu -3'
miRNA:   3'- -CCGCGGCUCgGgUGCUa--GU-GCAAGCc -5'
18406 5' -56.9 NC_004681.1 + 32097 0.7 0.53817
Target:  5'- cGGCGCCGAucagcgagccgauGCUgGCGAugaUCugGUUCa- -3'
miRNA:   3'- -CCGCGGCU-------------CGGgUGCU---AGugCAAGcc -5'
18406 5' -56.9 NC_004681.1 + 33494 0.69 0.600949
Target:  5'- uGGCGCCGAugcgguucagguGCCaCACGG-CGCGcgCGa -3'
miRNA:   3'- -CCGCGGCU------------CGG-GUGCUaGUGCaaGCc -5'
18406 5' -56.9 NC_004681.1 + 4928 0.68 0.620761
Target:  5'- cGGCGUCGAuGCgCUugGcagccauGUCGCGgUCGGg -3'
miRNA:   3'- -CCGCGGCU-CG-GGugC-------UAGUGCaAGCC- -5'
18406 5' -56.9 NC_004681.1 + 32139 0.68 0.621806
Target:  5'- uGCGCUGcuuGCCCAgGAUCACac-CGGc -3'
miRNA:   3'- cCGCGGCu--CGGGUgCUAGUGcaaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.